Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24,39■■□□□ 1,5
Ubp1Q811S7 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC24,39■■□□□ 1,49
Ubp1Q811S7 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC24,39■■□□□ 1,49
Ubp1Q811S7 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC24,38■■□□□ 1,49
Ubp1Q811S7 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24,38■■□□□ 1,49
Ubp1Q811S7 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24,38■■□□□ 1,49
Ubp1Q811S7 Zxda-201ENSMUST00000117281 2621 ntBASIC24,37■■□□□ 1,49
Ubp1Q811S7 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24,35■■□□□ 1,49
Ubp1Q811S7 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24,35■■□□□ 1,49
Ubp1Q811S7 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24,34■■□□□ 1,49
Ubp1Q811S7 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC24,33■■□□□ 1,49
Ubp1Q811S7 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC24,32■■□□□ 1,48
Ubp1Q811S7 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC24,32■■□□□ 1,48
Ubp1Q811S7 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24,32■■□□□ 1,48
Ubp1Q811S7 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC24,32■■□□□ 1,48
Ubp1Q811S7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24,32■■□□□ 1,48
Ubp1Q811S7 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC24,31■■□□□ 1,48
Ubp1Q811S7 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24,3■■□□□ 1,48
Ubp1Q811S7 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24,29■■□□□ 1,48
Ubp1Q811S7 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24,29■■□□□ 1,48
Ubp1Q811S7 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24,29■■□□□ 1,48
Ubp1Q811S7 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24,29■■□□□ 1,48
Ubp1Q811S7 Gm43863-201ENSMUST00000203822 1192 ntBASIC24,28■■□□□ 1,48
Ubp1Q811S7 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24,28■■□□□ 1,48
Ubp1Q811S7 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24,27■■□□□ 1,48
Ubp1Q811S7 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24,27■■□□□ 1,48
Ubp1Q811S7 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24,27■■□□□ 1,48
Ubp1Q811S7 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24,27■■□□□ 1,48
Ubp1Q811S7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24,27■■□□□ 1,48
Ubp1Q811S7 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC24,26■■□□□ 1,47
Ubp1Q811S7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24,26■■□□□ 1,47
Ubp1Q811S7 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24,25■■□□□ 1,47
Ubp1Q811S7 Gm24970-201ENSMUST00000175582 82 ntBASIC24,25■■□□□ 1,47
Ubp1Q811S7 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC24,25■■□□□ 1,47
Ubp1Q811S7 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24,24■■□□□ 1,47
Ubp1Q811S7 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24,24■■□□□ 1,47
Ubp1Q811S7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24,24■■□□□ 1,47
Ubp1Q811S7 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24,24■■□□□ 1,47
Ubp1Q811S7 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24,23■■□□□ 1,47
Ubp1Q811S7 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24,23■■□□□ 1,47
Ubp1Q811S7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24,23■■□□□ 1,47
Ubp1Q811S7 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24,22■■□□□ 1,47
Ubp1Q811S7 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24,22■■□□□ 1,47
Ubp1Q811S7 Gm43445-201ENSMUST00000198564 2091 ntBASIC24,22■■□□□ 1,47
Ubp1Q811S7 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24,21■■□□□ 1,47
Ubp1Q811S7 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24,21■■□□□ 1,47
Ubp1Q811S7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24,21■■□□□ 1,47
Ubp1Q811S7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC24,2■■□□□ 1,46
Ubp1Q811S7 Gm6206-201ENSMUST00000133472 2199 ntBASIC24,2■■□□□ 1,46
Ubp1Q811S7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24,19■■□□□ 1,46
Ubp1Q811S7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24,19■■□□□ 1,46
Ubp1Q811S7 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24,19■■□□□ 1,46
Ubp1Q811S7 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24,18■■□□□ 1,46
Ubp1Q811S7 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC24,18■■□□□ 1,46
Ubp1Q811S7 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24,18■■□□□ 1,46
Ubp1Q811S7 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24,17■■□□□ 1,46
Ubp1Q811S7 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24,16■■□□□ 1,46
Ubp1Q811S7 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24,15■■□□□ 1,46
Ubp1Q811S7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24,15■■□□□ 1,46
Ubp1Q811S7 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24,15■■□□□ 1,46
Ubp1Q811S7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24,15■■□□□ 1,46
Ubp1Q811S7 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC24,15■■□□□ 1,46
Ubp1Q811S7 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC24,14■■□□□ 1,46
Ubp1Q811S7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24,14■■□□□ 1,45
Ubp1Q811S7 AC157572.2-201ENSMUST00000226970 908 ntBASIC24,14■■□□□ 1,45
Ubp1Q811S7 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC24,14■■□□□ 1,45
Ubp1Q811S7 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC24,12■■□□□ 1,45
Ubp1Q811S7 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC24,12■■□□□ 1,45
Ubp1Q811S7 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC24,12■■□□□ 1,45
Ubp1Q811S7 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC24,12■■□□□ 1,45
Ubp1Q811S7 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC24,11■■□□□ 1,45
Ubp1Q811S7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24,11■■□□□ 1,45
Ubp1Q811S7 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24,11■■□□□ 1,45
Ubp1Q811S7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24,11■■□□□ 1,45
Ubp1Q811S7 Gm9905-201ENSMUST00000065740 1845 ntBASIC24,1■■□□□ 1,45
Ubp1Q811S7 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC24,1■■□□□ 1,45
Ubp1Q811S7 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24,1■■□□□ 1,45
Ubp1Q811S7 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC24,09■■□□□ 1,45
Ubp1Q811S7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24,09■■□□□ 1,45
Ubp1Q811S7 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24,09■■□□□ 1,45
Ubp1Q811S7 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC24,09■■□□□ 1,45
Ubp1Q811S7 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24,08■■□□□ 1,45
Ubp1Q811S7 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC24,08■■□□□ 1,45
Ubp1Q811S7 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24,06■■□□□ 1,44
Ubp1Q811S7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24,06■■□□□ 1,44
Ubp1Q811S7 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC24,05■■□□□ 1,44
Ubp1Q811S7 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC24,05■■□□□ 1,44
Ubp1Q811S7 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC24,05■■□□□ 1,44
Ubp1Q811S7 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24,05■■□□□ 1,44
Ubp1Q811S7 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC24,04■■□□□ 1,44
Ubp1Q811S7 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC24,04■■□□□ 1,44
Ubp1Q811S7 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24,03■■□□□ 1,44
Ubp1Q811S7 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24,03■■□□□ 1,44
Ubp1Q811S7 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC24,02■■□□□ 1,44
Ubp1Q811S7 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC24,01■■□□□ 1,43
Ubp1Q811S7 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC24,01■■□□□ 1,43
Ubp1Q811S7 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Ubp1Q811S7 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Ubp1Q811S7 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC24■■□□□ 1,43
Ubp1Q811S7 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1,43
Retrieved 100 of 76,532 protein–RNA pairs in 12,3 ms