Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Limch1Q3UH68 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
Limch1Q3UH68 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
Limch1Q3UH68 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
Limch1Q3UH68 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
Limch1Q3UH68 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Limch1Q3UH68 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Limch1Q3UH68 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC29.18■■■□□ 2.26
Limch1Q3UH68 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
Limch1Q3UH68 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
Limch1Q3UH68 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
Limch1Q3UH68 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Limch1Q3UH68 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Limch1Q3UH68 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Limch1Q3UH68 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC29.14■■■□□ 2.26
Limch1Q3UH68 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
Limch1Q3UH68 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
Limch1Q3UH68 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC29.12■■■□□ 2.25
Limch1Q3UH68 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Limch1Q3UH68 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Limch1Q3UH68 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
Limch1Q3UH68 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Limch1Q3UH68 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
Limch1Q3UH68 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC29.08■■■□□ 2.25
Limch1Q3UH68 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC29.08■■■□□ 2.25
Limch1Q3UH68 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC29.07■■■□□ 2.24
Limch1Q3UH68 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
Limch1Q3UH68 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Limch1Q3UH68 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Limch1Q3UH68 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC29.05■■■□□ 2.24
Limch1Q3UH68 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Limch1Q3UH68 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC29.04■■■□□ 2.24
Limch1Q3UH68 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Limch1Q3UH68 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC29.03■■■□□ 2.24
Limch1Q3UH68 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Limch1Q3UH68 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC29.02■■■□□ 2.24
Limch1Q3UH68 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Limch1Q3UH68 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Limch1Q3UH68 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC29.02■■■□□ 2.24
Limch1Q3UH68 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.02■■■□□ 2.24
Limch1Q3UH68 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC29.01■■■□□ 2.23
Limch1Q3UH68 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC29■■■□□ 2.23
Limch1Q3UH68 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29■■■□□ 2.23
Limch1Q3UH68 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC29■■■□□ 2.23
Limch1Q3UH68 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Limch1Q3UH68 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
Limch1Q3UH68 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Limch1Q3UH68 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
Limch1Q3UH68 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC28.96■■■□□ 2.23
Limch1Q3UH68 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC28.95■■■□□ 2.23
Limch1Q3UH68 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
Limch1Q3UH68 Amer2-203ENSMUST00000225247 2662 ntBASIC28.94■■■□□ 2.22
Limch1Q3UH68 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
Limch1Q3UH68 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
Limch1Q3UH68 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Limch1Q3UH68 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
Limch1Q3UH68 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Limch1Q3UH68 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC28.9■■■□□ 2.22
Limch1Q3UH68 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.9■■■□□ 2.22
Limch1Q3UH68 Gm24970-201ENSMUST00000175582 82 ntBASIC28.9■■■□□ 2.22
Limch1Q3UH68 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Limch1Q3UH68 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
Limch1Q3UH68 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC28.89■■■□□ 2.22
Limch1Q3UH68 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC28.87■■■□□ 2.21
Limch1Q3UH68 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
Limch1Q3UH68 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC28.85■■■□□ 2.21
Limch1Q3UH68 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC28.85■■■□□ 2.21
Limch1Q3UH68 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Limch1Q3UH68 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.21
Limch1Q3UH68 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Limch1Q3UH68 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC28.84■■■□□ 2.21
Limch1Q3UH68 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.82■■■□□ 2.2
Limch1Q3UH68 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Limch1Q3UH68 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC28.81■■■□□ 2.2
Limch1Q3UH68 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC28.81■■■□□ 2.2
Limch1Q3UH68 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Limch1Q3UH68 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Limch1Q3UH68 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC28.8■■■□□ 2.2
Limch1Q3UH68 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC28.8■■■□□ 2.2
Limch1Q3UH68 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC28.8■■■□□ 2.2
Limch1Q3UH68 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Limch1Q3UH68 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Limch1Q3UH68 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC28.79■■■□□ 2.2
Limch1Q3UH68 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC28.79■■■□□ 2.2
Limch1Q3UH68 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC28.79■■■□□ 2.2
Limch1Q3UH68 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC28.77■■■□□ 2.2
Limch1Q3UH68 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
Limch1Q3UH68 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Limch1Q3UH68 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
Limch1Q3UH68 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
Limch1Q3UH68 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC28.73■■■□□ 2.19
Limch1Q3UH68 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Limch1Q3UH68 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
Limch1Q3UH68 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC28.7■■■□□ 2.19
Limch1Q3UH68 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms