Protein–RNA interactions for Protein: O70400

Pdlim1, PDZ and LIM domain protein 1, mousemouse

Predictions only

Length 327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pdlim1O70400 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
Pdlim1O70400 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
Pdlim1O70400 Gm45855-201ENSMUST00000212546 880 ntBASIC24.71■■□□□ 1.55
Pdlim1O70400 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC24.69■■□□□ 1.54
Pdlim1O70400 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Pdlim1O70400 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pdlim1O70400 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pdlim1O70400 Gm24970-201ENSMUST00000175582 82 ntBASIC24.68■■□□□ 1.54
Pdlim1O70400 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
Pdlim1O70400 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC24.67■■□□□ 1.54
Pdlim1O70400 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC24.67■■□□□ 1.54
Pdlim1O70400 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.67■■□□□ 1.54
Pdlim1O70400 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
Pdlim1O70400 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
Pdlim1O70400 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC24.65■■□□□ 1.54
Pdlim1O70400 Zxda-201ENSMUST00000117281 2621 ntBASIC24.64■■□□□ 1.54
Pdlim1O70400 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
Pdlim1O70400 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Pdlim1O70400 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
Pdlim1O70400 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC24.62■■□□□ 1.53
Pdlim1O70400 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.62■■□□□ 1.53
Pdlim1O70400 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Pdlim1O70400 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Pdlim1O70400 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC24.59■■□□□ 1.53
Pdlim1O70400 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Pdlim1O70400 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC24.57■■□□□ 1.52
Pdlim1O70400 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
Pdlim1O70400 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC24.56■■□□□ 1.52
Pdlim1O70400 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Pdlim1O70400 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC24.55■■□□□ 1.52
Pdlim1O70400 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Pdlim1O70400 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC24.55■■□□□ 1.52
Pdlim1O70400 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC24.54■■□□□ 1.52
Pdlim1O70400 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Pdlim1O70400 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC24.54■■□□□ 1.52
Pdlim1O70400 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Pdlim1O70400 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Pdlim1O70400 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC24.52■■□□□ 1.52
Pdlim1O70400 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Pdlim1O70400 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Pdlim1O70400 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Pdlim1O70400 AC157572.2-201ENSMUST00000226970 908 ntBASIC24.5■■□□□ 1.51
Pdlim1O70400 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC24.5■■□□□ 1.51
Pdlim1O70400 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
Pdlim1O70400 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Pdlim1O70400 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC24.49■■□□□ 1.51
Pdlim1O70400 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Pdlim1O70400 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Pdlim1O70400 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
Pdlim1O70400 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Pdlim1O70400 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Pdlim1O70400 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC24.47■■□□□ 1.51
Pdlim1O70400 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC24.46■■□□□ 1.51
Pdlim1O70400 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Pdlim1O70400 Gm43445-201ENSMUST00000198564 2091 ntBASIC24.45■■□□□ 1.5
Pdlim1O70400 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC24.45■■□□□ 1.5
Pdlim1O70400 Gm9905-201ENSMUST00000065740 1845 ntBASIC24.45■■□□□ 1.5
Pdlim1O70400 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Pdlim1O70400 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
Pdlim1O70400 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Pdlim1O70400 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
Pdlim1O70400 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC24.42■■□□□ 1.5
Pdlim1O70400 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24.41■■□□□ 1.5
Pdlim1O70400 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Pdlim1O70400 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
Pdlim1O70400 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Pdlim1O70400 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Pdlim1O70400 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Pdlim1O70400 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Pdlim1O70400 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pdlim1O70400 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC24.38■■□□□ 1.49
Pdlim1O70400 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Pdlim1O70400 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Pdlim1O70400 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Pdlim1O70400 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Pdlim1O70400 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Pdlim1O70400 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Pdlim1O70400 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.35■■□□□ 1.49
Pdlim1O70400 Gm6206-201ENSMUST00000133472 2199 ntBASIC24.35■■□□□ 1.49
Pdlim1O70400 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC24.34■■□□□ 1.49
Pdlim1O70400 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pdlim1O70400 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC24.33■■□□□ 1.49
Pdlim1O70400 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC24.32■■□□□ 1.48
Pdlim1O70400 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.32■■□□□ 1.48
Pdlim1O70400 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC24.31■■□□□ 1.48
Pdlim1O70400 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
Pdlim1O70400 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC24.31■■□□□ 1.48
Pdlim1O70400 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
Pdlim1O70400 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.3■■□□□ 1.48
Pdlim1O70400 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC24.3■■□□□ 1.48
Pdlim1O70400 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Pdlim1O70400 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Pdlim1O70400 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
Pdlim1O70400 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
Pdlim1O70400 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pdlim1O70400 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
Pdlim1O70400 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC24.27■■□□□ 1.48
Pdlim1O70400 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
Pdlim1O70400 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC24.25■■□□□ 1.47
Pdlim1O70400 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms