Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.57■□□□□ 0.56
Trav9-4A0A0B4J1K2 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.56■□□□□ 0.56
Trav9-4A0A0B4J1K2 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9-4A0A0B4J1K2 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9-4A0A0B4J1K2 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Trav9-4A0A0B4J1K2 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
Trav9-4A0A0B4J1K2 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Trav9-4A0A0B4J1K2 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Gm45855-201ENSMUST00000212546 880 ntBASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Trav9-4A0A0B4J1K2 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
Trav9-4A0A0B4J1K2 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Trav9-4A0A0B4J1K2 Gm9397-201ENSMUST00000200125 605 ntBASIC18.53■□□□□ 0.56
Trav9-4A0A0B4J1K2 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Trav9-4A0A0B4J1K2 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Trav9-4A0A0B4J1K2 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Trav9-4A0A0B4J1K2 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav9-4A0A0B4J1K2 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Trav9-4A0A0B4J1K2 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9-4A0A0B4J1K2 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC18.49■□□□□ 0.55
Trav9-4A0A0B4J1K2 Gm43445-201ENSMUST00000198564 2091 ntBASIC18.49■□□□□ 0.55
Trav9-4A0A0B4J1K2 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Trav9-4A0A0B4J1K2 Gm6206-201ENSMUST00000133472 2199 ntBASIC18.48■□□□□ 0.55
Trav9-4A0A0B4J1K2 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav9-4A0A0B4J1K2 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Trav9-4A0A0B4J1K2 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Trav9-4A0A0B4J1K2 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC18.45■□□□□ 0.54
Trav9-4A0A0B4J1K2 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Gm9905-201ENSMUST00000065740 1845 ntBASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
Trav9-4A0A0B4J1K2 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Trav9-4A0A0B4J1K2 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Trav9-4A0A0B4J1K2 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC18.41■□□□□ 0.54
Trav9-4A0A0B4J1K2 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Trav9-4A0A0B4J1K2 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC18.41■□□□□ 0.54
Trav9-4A0A0B4J1K2 Gm24970-201ENSMUST00000175582 82 ntBASIC18.4■□□□□ 0.54
Trav9-4A0A0B4J1K2 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Trav9-4A0A0B4J1K2 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
Trav9-4A0A0B4J1K2 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Trav9-4A0A0B4J1K2 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav9-4A0A0B4J1K2 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav9-4A0A0B4J1K2 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Trav9-4A0A0B4J1K2 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Trav9-4A0A0B4J1K2 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Trav9-4A0A0B4J1K2 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav9-4A0A0B4J1K2 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Trav9-4A0A0B4J1K2 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.37■□□□□ 0.53
Trav9-4A0A0B4J1K2 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav9-4A0A0B4J1K2 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Trav9-4A0A0B4J1K2 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.36■□□□□ 0.53
Trav9-4A0A0B4J1K2 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.36■□□□□ 0.53
Trav9-4A0A0B4J1K2 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC18.35■□□□□ 0.53
Trav9-4A0A0B4J1K2 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav9-4A0A0B4J1K2 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC18.34■□□□□ 0.53
Trav9-4A0A0B4J1K2 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.34■□□□□ 0.53
Trav9-4A0A0B4J1K2 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Trav9-4A0A0B4J1K2 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Trav9-4A0A0B4J1K2 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trav9-4A0A0B4J1K2 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trav9-4A0A0B4J1K2 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Trav9-4A0A0B4J1K2 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trav9-4A0A0B4J1K2 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
Trav9-4A0A0B4J1K2 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC18.31■□□□□ 0.52
Trav9-4A0A0B4J1K2 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trav9-4A0A0B4J1K2 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Trav9-4A0A0B4J1K2 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC18.3■□□□□ 0.52
Trav9-4A0A0B4J1K2 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Trav9-4A0A0B4J1K2 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trav9-4A0A0B4J1K2 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav9-4A0A0B4J1K2 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav9-4A0A0B4J1K2 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trav9-4A0A0B4J1K2 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav9-4A0A0B4J1K2 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav9-4A0A0B4J1K2 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav9-4A0A0B4J1K2 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trav9-4A0A0B4J1K2 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms