Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm23734-201ENSMUST00000083753 109 ntBASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm44854-201ENSMUST00000205493 2340 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm13081-201ENSMUST00000121527 5599 ntBASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Cept1-202ENSMUST00000068301 2814 ntAPPRIS P3 TSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm10475-201ENSMUST00000084713 1796 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 2610028E06Rik-205ENSMUST00000156350 3623 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm28867-201ENSMUST00000190194 2166 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm39041-201ENSMUST00000205557 3902 ntBASIC10.08□□□□□ -0.8
Usp40Q8BWR4 AC122881.1-201ENSMUST00000225757 2695 ntBASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Ggta1-205ENSMUST00000113002 3391 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
Usp40Q8BWR4 Gm10307-201ENSMUST00000189839 1337 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Trim30c-201ENSMUST00000106828 1716 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Sema5a-201ENSMUST00000067458 10809 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Matr3-215ENSMUST00000190121 2638 ntTSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Hipk3-203ENSMUST00000111125 3651 ntTSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Zfp790-201ENSMUST00000032796 3376 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 BC025920-201ENSMUST00000099442 2785 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Zzz3-202ENSMUST00000106100 7607 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Apobec1-203ENSMUST00000112587 2072 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm9311-201ENSMUST00000118042 1269 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Sh3bgr-207ENSMUST00000171181 678 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm42421-201ENSMUST00000172367 719 ntAPPRIS P1 TSL 3 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Mir8105-201ENSMUST00000184718 89 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm28983-201ENSMUST00000186685 614 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm28150-201ENSMUST00000187305 614 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm28556-201ENSMUST00000187489 673 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm28377-201ENSMUST00000189695 720 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm19211-201ENSMUST00000200251 1206 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm8479-201ENSMUST00000203825 718 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm4585-201ENSMUST00000207218 452 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm18907-201ENSMUST00000209719 932 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Rpl17-ps6-201ENSMUST00000222192 532 ntBASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Nudt7-202ENSMUST00000073521 3543 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Deptor-201ENSMUST00000023056 3300 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Arhgap17-201ENSMUST00000098060 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Ssbp1-202ENSMUST00000114779 4398 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Akap10-201ENSMUST00000058173 2015 ntTSL 2 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Zfp292-202ENSMUST00000098163 9941 ntAPPRIS ALT2 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Nkrf-201ENSMUST00000057093 3268 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Stk26-202ENSMUST00000114887 3173 ntTSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Olfr1346-202ENSMUST00000207658 4429 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Gm3752-201ENSMUST00000164366 1817 ntAPPRIS P1 TSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Nae1-211ENSMUST00000162466 1735 ntTSL 5 BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Slc2a9-203ENSMUST00000067886 3602 ntAPPRIS P4 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Chek2-201ENSMUST00000066160 2276 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
Usp40Q8BWR4 Klf10-202ENSMUST00000226363 2917 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Cd300lg-203ENSMUST00000107164 2737 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Olfr750-202ENSMUST00000216202 5789 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Nsun6-204ENSMUST00000114715 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 4632411P08Rik-201ENSMUST00000181005 3237 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Liph-201ENSMUST00000060673 3793 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm36401-201ENSMUST00000194255 2028 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Lyg2-201ENSMUST00000078307 2564 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm20754-202ENSMUST00000192642 1357 ntTSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Usp54-201ENSMUST00000022356 6580 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 4931406B18Rik-203ENSMUST00000163619 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm13156-201ENSMUST00000118348 321 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm26183-201ENSMUST00000157685 139 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm22728-201ENSMUST00000158087 129 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm17022-201ENSMUST00000166415 922 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm28975-201ENSMUST00000186412 686 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Ptma-204ENSMUST00000188533 593 ntTSL 3 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm37556-201ENSMUST00000193877 468 ntTSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm42963-201ENSMUST00000202943 1217 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm44566-201ENSMUST00000207638 304 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Cd209d-202ENSMUST00000209176 672 ntAPPRIS ALT2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm34654-201ENSMUST00000217012 535 ntTSL 3 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Glycam1-204ENSMUST00000228895 641 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm10108-201ENSMUST00000078246 319 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 n-R5s169-201ENSMUST00000083110 120 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Rhox3h-201ENSMUST00000096457 1053 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Vtcn1-201ENSMUST00000054791 2622 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm45737-201ENSMUST00000208344 1612 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm45887-201ENSMUST00000212672 2998 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Dclk1-201ENSMUST00000054237 7847 ntAPPRIS P2 TSL 1 (best) BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Grik2-205ENSMUST00000218598 3245 ntTSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 AC153955.4-201ENSMUST00000217069 2752 ntBASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Olfr342-202ENSMUST00000216275 3818 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
Usp40Q8BWR4 Gm37043-201ENSMUST00000194609 3105 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm28311-201ENSMUST00000185236 1497 ntTSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm28549-202ENSMUST00000191354 1497 ntTSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm498-207ENSMUST00000207630 1483 ntTSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Nt5c2-201ENSMUST00000086961 3745 ntTSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Muc6-201ENSMUST00000062451 8650 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm16973-202ENSMUST00000180752 1972 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 4930548H24Rik-201ENSMUST00000031020 1641 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Igsf9b-204ENSMUST00000214357 16144 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Zfp943-201ENSMUST00000055349 2741 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm22709-201ENSMUST00000116893 111 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm7821-201ENSMUST00000117111 788 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm15203-201ENSMUST00000117668 455 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm14727-201ENSMUST00000118526 525 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm9439-201ENSMUST00000119554 973 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm15007-201ENSMUST00000119982 710 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm14721-201ENSMUST00000121381 525 ntBASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm16224-201ENSMUST00000127711 412 ntTSL 3 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 AU015336-201ENSMUST00000159040 849 ntTSL 5 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm2026-203ENSMUST00000174416 532 ntTSL 3 BASIC10.05□□□□□ -0.8
Usp40Q8BWR4 Gm22923-201ENSMUST00000174952 110 ntBASIC10.05□□□□□ -0.8
Retrieved 100 of 76,532 protein–RNA pairs in 79.5 ms