Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Gm7514-201ENSMUST00000209475 934 ntBASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Prpf40aQ9R1C7 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Prpf40aQ9R1C7 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Prpf40aQ9R1C7 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Prpf40aQ9R1C7 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Prpf40aQ9R1C7 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Prpf40aQ9R1C7 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Prpf40aQ9R1C7 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Gm27405-201ENSMUST00000184201 112 ntBASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Prpf40aQ9R1C7 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Prpf40aQ9R1C7 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.21■□□□□ 0.83
Prpf40aQ9R1C7 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms