Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Hmgn3Q9DCB1 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Wipf1-201ENSMUST00000094681 4728 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Hmgn3Q9DCB1 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Dnajb11-205ENSMUST00000178320 1628 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Hmgn3Q9DCB1 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Hmgn3Q9DCB1 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Gm15546-201ENSMUST00000122095 826 ntBASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Gm15743-202ENSMUST00000182690 1901 ntBASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Hmgn3Q9DCB1 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Hmgn3Q9DCB1 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
Hmgn3Q9DCB1 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Hmgn3Q9DCB1 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms