Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ddx56Q9D0R4 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ddx56Q9D0R4 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.39■□□□□ 0.69
Ddx56Q9D0R4 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 AC160393.1-201ENSMUST00000218378 1279 ntBASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC19.38■□□□□ 0.69
Ddx56Q9D0R4 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Smox-209ENSMUST00000110189 1919 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Gm43213-201ENSMUST00000151866 1790 ntBASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
Ddx56Q9D0R4 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ddx56Q9D0R4 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Gm15039-201ENSMUST00000118914 875 ntBASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Gm42569-201ENSMUST00000200539 472 ntBASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Ddx56Q9D0R4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Ddx56Q9D0R4 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Ddx56Q9D0R4 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx56Q9D0R4 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx56Q9D0R4 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx56Q9D0R4 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx56Q9D0R4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Ddx56Q9D0R4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Ddx56Q9D0R4 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms