Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Gm13146-201ENSMUST00000118508 780 ntBASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Gm43231-201ENSMUST00000202960 2258 ntBASIC21.45■■□□□ 1.02
Vps53Q8CCB4 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Unc13b-201ENSMUST00000079978 6354 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Gm5540-201ENSMUST00000131852 1848 ntBASIC21.44■■□□□ 1.02
Vps53Q8CCB4 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Vps53Q8CCB4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Gm8520-201ENSMUST00000186517 868 ntBASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Vps53Q8CCB4 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Gm12527-201ENSMUST00000117967 564 ntBASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Gm6365-201ENSMUST00000054711 744 ntBASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Vps53Q8CCB4 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
Vps53Q8CCB4 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Gm5112-201ENSMUST00000204407 2368 ntBASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Gm5408-201ENSMUST00000197998 747 ntBASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Vps53Q8CCB4 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Vps53Q8CCB4 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Gm13148-201ENSMUST00000118892 745 ntBASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC21.39■■□□□ 1.01
Vps53Q8CCB4 CT030146.1-201ENSMUST00000220919 217 ntBASIC21.39■■□□□ 1.01
Vps53Q8CCB4 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 54.7 ms