Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ShhQ62226 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ShhQ62226 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ShhQ62226 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
ShhQ62226 Gm13146-201ENSMUST00000118508 780 ntBASIC17.15■□□□□ 0.34
ShhQ62226 Gm6420-201ENSMUST00000193885 723 ntBASIC17.15■□□□□ 0.34
ShhQ62226 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.15■□□□□ 0.34
ShhQ62226 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC17.15■□□□□ 0.34
ShhQ62226 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.15■□□□□ 0.34
ShhQ62226 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC17.15■□□□□ 0.34
ShhQ62226 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ShhQ62226 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ShhQ62226 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
ShhQ62226 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
ShhQ62226 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC17.14■□□□□ 0.33
ShhQ62226 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.14■□□□□ 0.33
ShhQ62226 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ShhQ62226 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC17.14■□□□□ 0.33
ShhQ62226 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ShhQ62226 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ShhQ62226 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.13■□□□□ 0.33
ShhQ62226 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
ShhQ62226 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC17.13■□□□□ 0.33
ShhQ62226 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
ShhQ62226 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Gm6576-201ENSMUST00000169678 883 ntBASIC17.13■□□□□ 0.33
ShhQ62226 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ShhQ62226 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.12■□□□□ 0.33
ShhQ62226 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ShhQ62226 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ShhQ62226 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.11■□□□□ 0.33
ShhQ62226 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.11■□□□□ 0.33
ShhQ62226 Gm7860-201ENSMUST00000121190 879 ntBASIC17.11■□□□□ 0.33
ShhQ62226 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
ShhQ62226 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Gm38205-201ENSMUST00000192243 258 ntBASIC17.11■□□□□ 0.33
ShhQ62226 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.11■□□□□ 0.33
ShhQ62226 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
ShhQ62226 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC17.11■□□□□ 0.33
ShhQ62226 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ShhQ62226 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
ShhQ62226 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ShhQ62226 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
ShhQ62226 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms