Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Limch1Q3UH68 Gm4968-201ENSMUST00000071458 858 ntBASIC21.7■■□□□ 1.06
Limch1Q3UH68 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
Limch1Q3UH68 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Limch1Q3UH68 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Limch1Q3UH68 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Limch1Q3UH68 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Nespas-201ENSMUST00000143738 1083 ntBASIC21.69■■□□□ 1.06
Limch1Q3UH68 CT010467.1-202ENSMUST00000205406 714 ntBASIC21.69■■□□□ 1.06
Limch1Q3UH68 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Limch1Q3UH68 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21.68■■□□□ 1.06
Limch1Q3UH68 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Limch1Q3UH68 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Limch1Q3UH68 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Gm10653-202ENSMUST00000139570 835 ntBASIC21.67■■□□□ 1.06
Limch1Q3UH68 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Limch1Q3UH68 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.67■■□□□ 1.06
Limch1Q3UH68 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.67■■□□□ 1.06
Limch1Q3UH68 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Limch1Q3UH68 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
Limch1Q3UH68 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC21.66■■□□□ 1.06
Limch1Q3UH68 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Gm3807-201ENSMUST00000193520 1168 ntBASIC21.66■■□□□ 1.06
Limch1Q3UH68 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Limch1Q3UH68 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Limch1Q3UH68 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Limch1Q3UH68 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
Limch1Q3UH68 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC21.64■■□□□ 1.06
Limch1Q3UH68 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.06
Limch1Q3UH68 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Limch1Q3UH68 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Limch1Q3UH68 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC21.64■■□□□ 1.05
Limch1Q3UH68 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Limch1Q3UH68 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Limch1Q3UH68 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Gm26971-201ENSMUST00000182423 1072 ntBASIC21.63■■□□□ 1.05
Limch1Q3UH68 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
Limch1Q3UH68 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms