Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Col2a1P28481 Zfp382-201ENSMUST00000098596 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC21.1■□□□□ 0.97
Col2a1P28481 Mir7071-201ENSMUST00000184847 69 ntBASIC21.1■□□□□ 0.97
Col2a1P28481 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Col2a1P28481 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col2a1P28481 Baiap2-203ENSMUST00000103021 3398 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col2a1P28481 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.09■□□□□ 0.97
Col2a1P28481 Ankdd1a-201ENSMUST00000061766 1443 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Col2a1P28481 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col2a1P28481 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Col2a1P28481 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC21.09■□□□□ 0.97
Col2a1P28481 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Col2a1P28481 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col2a1P28481 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Col2a1P28481 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Col2a1P28481 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Col2a1P28481 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Col2a1P28481 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col2a1P28481 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.07■□□□□ 0.96
Col2a1P28481 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Col2a1P28481 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Gm37292-201ENSMUST00000192062 758 ntBASIC21.07■□□□□ 0.96
Col2a1P28481 Gm43183-201ENSMUST00000200632 547 ntBASIC21.07■□□□□ 0.96
Col2a1P28481 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Col2a1P28481 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Col2a1P28481 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 AL672049.1-201ENSMUST00000197943 91 ntBASIC21.06■□□□□ 0.96
Col2a1P28481 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC21.06■□□□□ 0.96
Col2a1P28481 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Col2a1P28481 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
Col2a1P28481 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC21.05■□□□□ 0.96
Col2a1P28481 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
Col2a1P28481 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC21.05■□□□□ 0.96
Col2a1P28481 Gm21814-202ENSMUST00000203277 873 ntBASIC21.05■□□□□ 0.96
Col2a1P28481 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
Col2a1P28481 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Col2a1P28481 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Col2a1P28481 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.04■□□□□ 0.96
Col2a1P28481 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC21.04■□□□□ 0.96
Col2a1P28481 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC21.04■□□□□ 0.96
Col2a1P28481 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Col2a1P28481 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Col2a1P28481 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm38345-201ENSMUST00000192635 1748 ntBASIC21.04■□□□□ 0.96
Col2a1P28481 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Col2a1P28481 Gm9885-202ENSMUST00000186234 2209 ntBASIC21.04■□□□□ 0.96
Col2a1P28481 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Col2a1P28481 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col2a1P28481 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col2a1P28481 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Col2a1P28481 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC21.03■□□□□ 0.96
Col2a1P28481 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC21.03■□□□□ 0.96
Col2a1P28481 Gm42545-201ENSMUST00000202755 922 ntBASIC21.03■□□□□ 0.96
Col2a1P28481 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC21.03■□□□□ 0.96
Col2a1P28481 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
Col2a1P28481 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col2a1P28481 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Col2a1P28481 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms