Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Chmp6P0C0A3 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Chmp6P0C0A3 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Chmp6P0C0A3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Cdc14b-201ENSMUST00000039318 5859 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chmp6P0C0A3 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Chmp6P0C0A3 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Chmp6P0C0A3 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Chmp6P0C0A3 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Chmp6P0C0A3 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chmp6P0C0A3 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Chmp6P0C0A3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
Chmp6P0C0A3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chmp6P0C0A3 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chmp6P0C0A3 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chmp6P0C0A3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.98■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms