Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Gm40881-201ENSMUST00000223397 166 ntBASIC15.35■□□□□ 0.05
Hmgb3O54879 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC15.35■□□□□ 0.05
Hmgb3O54879 March2-203ENSMUST00000172767 1381 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Irs1-201ENSMUST00000069799 9144 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Hmgb3O54879 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
Hmgb3O54879 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Hectd1-202ENSMUST00000179265 9012 ntTSL 5 BASIC15.34■□□□□ 0.05
Hmgb3O54879 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Hmgb3O54879 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC15.34■□□□□ 0.05
Hmgb3O54879 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC15.34■□□□□ 0.05
Hmgb3O54879 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
Hmgb3O54879 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Gm44832-201ENSMUST00000208849 2303 ntBASIC15.34■□□□□ 0.05
Hmgb3O54879 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Hmgb3O54879 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Hmgb3O54879 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Hmgb3O54879 Eif5a-213ENSMUST00000164359 1281 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Hmgb3O54879 Gm9870-201ENSMUST00000063874 645 ntBASIC15.33■□□□□ 0.04
Hmgb3O54879 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Hmgb3O54879 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Gm5540-201ENSMUST00000131852 1848 ntBASIC15.33■□□□□ 0.04
Hmgb3O54879 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
Hmgb3O54879 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Hmgb3O54879 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Synm-202ENSMUST00000074233 7818 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Hmgb3O54879 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Hmgb3O54879 Miat-205ENSMUST00000182953 9163 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC15.32■□□□□ 0.04
Hmgb3O54879 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC15.32■□□□□ 0.04
Hmgb3O54879 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Hmgb3O54879 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Gm42900-201ENSMUST00000197184 2167 ntBASIC15.31■□□□□ 0.04
Hmgb3O54879 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Gm10657-201ENSMUST00000193528 1031 ntBASIC15.31■□□□□ 0.04
Hmgb3O54879 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Gm44443-201ENSMUST00000204396 5633 ntBASIC15.31■□□□□ 0.04
Hmgb3O54879 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Hmgb3O54879 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Hmgb3O54879 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Hmgb3O54879 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms