Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm9359-201ENSMUST00000163721 1221 ntBASIC11.4□□□□□ -0.58
Cux1P53564 Vmn1r29-201ENSMUST00000168416 1023 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cux1P53564 Esd-209ENSMUST00000177181 835 ntTSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 Gm2888-202ENSMUST00000178577 618 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 Scgb1b16-ps-201ENSMUST00000186029 275 ntBASIC11.4□□□□□ -0.58
Cux1P53564 Scgb1b14-ps-201ENSMUST00000188286 275 ntBASIC11.4□□□□□ -0.58
Cux1P53564 1700051K13Rik-201ENSMUST00000204426 696 ntBASIC11.4□□□□□ -0.58
Cux1P53564 CT010453.2-201ENSMUST00000227005 483 ntBASIC11.4□□□□□ -0.58
Cux1P53564 Fate1-201ENSMUST00000066116 938 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Olfr473-201ENSMUST00000084761 933 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cux1P53564 Defb46-201ENSMUST00000095436 174 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Csnk1d-202ENSMUST00000070575 3500 ntAPPRIS ALT1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Mcmdc2-201ENSMUST00000052843 2826 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Asph-209ENSMUST00000108335 2514 ntTSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 Pkd1l2-201ENSMUST00000098375 7386 ntAPPRIS P2 TSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 Crebbp-205ENSMUST00000205765 7749 ntAPPRIS ALT2 TSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 AC159809.2-202ENSMUST00000214073 3333 ntTSL 5 BASIC11.4□□□□□ -0.58
Cux1P53564 St7-203ENSMUST00000053148 2288 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Gm26645-201ENSMUST00000181076 1316 ntBASIC11.4□□□□□ -0.58
Cux1P53564 CT030185.2-201ENSMUST00000222614 1310 ntBASIC11.4□□□□□ -0.58
Cux1P53564 Mstn-201ENSMUST00000027269 2705 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Galntl6-207ENSMUST00000204067 1592 ntTSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Slc34a1-205ENSMUST00000225259 3983 ntAPPRIS P1 BASIC11.4□□□□□ -0.58
Cux1P53564 Prkrip1-204ENSMUST00000151786 3893 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Atg7-202ENSMUST00000169310 3895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Slc5a6-205ENSMUST00000202520 3248 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.58
Cux1P53564 Calb1-201ENSMUST00000029876 4222 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cux1P53564 Ace2-202ENSMUST00000112271 3578 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cux1P53564 Gm7690-201ENSMUST00000190885 1399 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Rassf2-202ENSMUST00000103182 4589 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Cux1P53564 Tmem43-201ENSMUST00000032183 2903 ntAPPRIS P1 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cux1P53564 Gm2178-201ENSMUST00000104927 357 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Gm14891-201ENSMUST00000117378 596 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Gm8312-201ENSMUST00000119380 618 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Gm15763-201ENSMUST00000120136 403 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Rps19-ps14-201ENSMUST00000121832 269 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Obox3-ps3-201ENSMUST00000177242 1004 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Gm42723-201ENSMUST00000199966 1044 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Gm45303-201ENSMUST00000211239 676 ntTSL 3 BASIC11.4□□□□□ -0.59
Cux1P53564 AC069561.1-201ENSMUST00000213750 424 ntBASIC11.4□□□□□ -0.59
Cux1P53564 CT030238.4-202ENSMUST00000226143 745 ntBASIC11.4□□□□□ -0.59
Cux1P53564 AC121542.2-201ENSMUST00000227529 400 ntBASIC11.4□□□□□ -0.59
Cux1P53564 Olfr610-201ENSMUST00000063109 948 ntAPPRIS P1 BASIC11.4□□□□□ -0.59
Cux1P53564 Boll-201ENSMUST00000087585 882 ntAPPRIS P2 TSL 1 (best) BASIC11.4□□□□□ -0.59
Cux1P53564 Slx-201ENSMUST00000096913 925 ntAPPRIS P1 TSL 5 BASIC11.4□□□□□ -0.59
Cux1P53564 Gm35206-201ENSMUST00000217945 1642 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Olfr332-201ENSMUST00000180165 3426 ntAPPRIS P1 TSL 2 BASIC11.39□□□□□ -0.59
Cux1P53564 Polr2a-201ENSMUST00000058470 6740 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Clasp1-214ENSMUST00000189570 5502 ntAPPRIS ALT2 TSL 5 BASIC11.39□□□□□ -0.59
Cux1P53564 Gm37956-201ENSMUST00000195208 2010 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Scn3b-202ENSMUST00000114956 4045 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Cacna1d-201ENSMUST00000112249 8068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Gm37080-201ENSMUST00000194804 2404 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Tpo-201ENSMUST00000021005 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Gigyf2-217ENSMUST00000174501 3876 ntAPPRIS P3 TSL 5 BASIC11.39□□□□□ -0.59
Cux1P53564 Meis1-201ENSMUST00000068264 3196 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Cdh13-201ENSMUST00000117160 3785 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Aagab-201ENSMUST00000041551 5294 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Gm16110-201ENSMUST00000161473 892 ntTSL 3 BASIC11.39□□□□□ -0.59
Cux1P53564 Cbx3-ps6-201ENSMUST00000181108 552 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Gm26901-201ENSMUST00000181554 1193 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Mir6989-201ENSMUST00000184812 65 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Gm24826-202ENSMUST00000197298 216 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Smarca2-231ENSMUST00000208091 1140 ntTSL 5 BASIC11.39□□□□□ -0.59
Cux1P53564 Gm44546-201ENSMUST00000208353 368 ntTSL 2 BASIC11.39□□□□□ -0.59
Cux1P53564 Gm19047-201ENSMUST00000220922 1099 ntBASIC11.39□□□□□ -0.59
Cux1P53564 5530400C23Rik-201ENSMUST00000048459 649 ntAPPRIS P1 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Cbx3-ps7-201ENSMUST00000081455 552 ntBASIC11.39□□□□□ -0.59
Cux1P53564 Ank1-215ENSMUST00000173248 7100 ntAPPRIS ALT2 TSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 Gm31152-201ENSMUST00000210319 2171 ntTSL 1 (best) BASIC11.39□□□□□ -0.59
Cux1P53564 AC126806.1-201ENSMUST00000217349 3869 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Kalrn-204ENSMUST00000114949 3618 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Pkd1l2-202ENSMUST00000109093 7389 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Apobec1-201ENSMUST00000112585 2127 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Kif1b-201ENSMUST00000030806 6991 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28758-201ENSMUST00000186123 2167 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28839-201ENSMUST00000189579 2171 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Zfp551-201ENSMUST00000080348 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28892-201ENSMUST00000188123 2721 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm12959-201ENSMUST00000119396 403 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Gm7494-201ENSMUST00000121248 441 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Gm35202-201ENSMUST00000130083 712 ntTSL 2 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm15551-201ENSMUST00000132762 535 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm29156-201ENSMUST00000187764 499 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Gm8168-201ENSMUST00000209631 948 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Gm7351-201ENSMUST00000210745 580 ntBASIC11.38□□□□□ -0.59
Cux1P53564 9130015A21Rik-202ENSMUST00000222153 837 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm34552-201ENSMUST00000223381 636 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 AC123665.3-201ENSMUST00000228735 1216 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Olfr574-201ENSMUST00000052997 1041 ntAPPRIS P2 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm29486-201ENSMUST00000088648 372 ntBASIC11.38□□□□□ -0.59
Cux1P53564 Vmn1r195-201ENSMUST00000091736 1088 ntAPPRIS P1 BASIC11.38□□□□□ -0.59
Cux1P53564 Zfp709-203ENSMUST00000188685 7186 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Elmod2-206ENSMUST00000177594 4704 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Ctnnd1-207ENSMUST00000111676 5852 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Nlrc5-207ENSMUST00000211816 7578 ntAPPRIS P1 TSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28407-201ENSMUST00000185630 1497 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm29398-201ENSMUST00000186355 1491 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28108-201ENSMUST00000186747 1497 ntTSL 5 BASIC11.38□□□□□ -0.59
Cux1P53564 Gm28218-202ENSMUST00000186782 1498 ntTSL 5 BASIC11.38□□□□□ -0.59
Retrieved 100 of 76,532 protein–RNA pairs in 80.7 ms