Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Camsap3-206ENSMUST00000207533 2584 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim39Q9ESN2 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Trim39Q9ESN2 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim39Q9ESN2 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim39Q9ESN2 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Trim39Q9ESN2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Trim39Q9ESN2 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim39Q9ESN2 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim39Q9ESN2 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
Trim39Q9ESN2 Mcub-201ENSMUST00000029624 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim39Q9ESN2 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Gm27801-201ENSMUST00000184174 223 ntBASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Gm43060-201ENSMUST00000200621 289 ntBASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Acbd6-202ENSMUST00000080138 993 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim39Q9ESN2 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms