Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Upf1Q9EPU0 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Gm27389-201ENSMUST00000183622 195 ntBASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Gm5864-201ENSMUST00000202263 970 ntBASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Upf1Q9EPU0 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Otx2os1-206ENSMUST00000228153 787 ntBASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Upf1Q9EPU0 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Gm27525-201ENSMUST00000184465 107 ntBASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Gm38027-201ENSMUST00000192315 235 ntBASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Birc2-201ENSMUST00000054878 378 ntBASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Upf1Q9EPU0 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Upf1Q9EPU0 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Upf1Q9EPU0 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Pdcd5-202ENSMUST00000120714 767 ntTSL 3 BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Upf1Q9EPU0 Pou2f2-204ENSMUST00000108416 1754 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Upf1Q9EPU0 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Gm4217-201ENSMUST00000182243 1002 ntBASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Mir8098-201ENSMUST00000184011 137 ntBASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Gm38285-201ENSMUST00000192928 922 ntBASIC21.2■□□□□ 0.98
Upf1Q9EPU0 AC154621.1-201ENSMUST00000226155 1119 ntBASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Upf1Q9EPU0 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Gm18733-201ENSMUST00000173950 856 ntBASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Tssc4-208ENSMUST00000208779 647 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Upf1Q9EPU0 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms