Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Msh4Q99MT2 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
Msh4Q99MT2 CT010467.1-202ENSMUST00000205406 714 ntBASIC18.02■□□□□ 0.48
Msh4Q99MT2 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Msh4Q99MT2 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Msh4Q99MT2 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Msh4Q99MT2 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Gm13146-201ENSMUST00000118508 780 ntBASIC18.01■□□□□ 0.47
Msh4Q99MT2 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Gm7514-201ENSMUST00000209475 934 ntBASIC18.01■□□□□ 0.47
Msh4Q99MT2 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Msh4Q99MT2 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Msh4Q99MT2 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Msh4Q99MT2 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
Msh4Q99MT2 Gm7860-201ENSMUST00000121190 879 ntBASIC18■□□□□ 0.47
Msh4Q99MT2 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Msh4Q99MT2 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC17.99■□□□□ 0.47
Msh4Q99MT2 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
Msh4Q99MT2 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Msh4Q99MT2 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Gm29257-201ENSMUST00000186115 639 ntBASIC17.98■□□□□ 0.47
Msh4Q99MT2 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC17.98■□□□□ 0.47
Msh4Q99MT2 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Gm9885-202ENSMUST00000186234 2209 ntBASIC17.98■□□□□ 0.47
Msh4Q99MT2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Msh4Q99MT2 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh4Q99MT2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh4Q99MT2 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
Msh4Q99MT2 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.97■□□□□ 0.47
Msh4Q99MT2 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms