Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Nkd1-201ENSMUST00000034086 3035 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Usp49Q6P9L4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gm26571-201ENSMUST00000181399 666 ntBASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gm6420-201ENSMUST00000193885 723 ntBASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Usp49Q6P9L4 AC131586.2-201ENSMUST00000228370 1512 ntBASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Nespas-201ENSMUST00000143738 1083 ntBASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Usp49Q6P9L4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
Usp49Q6P9L4 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp49Q6P9L4 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
Usp49Q6P9L4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
Usp49Q6P9L4 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Usp49Q6P9L4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Grk6-206ENSMUST00000224995 2971 ntBASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Usp49Q6P9L4 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Gm29257-201ENSMUST00000186115 639 ntBASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Usp49Q6P9L4 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Usp49Q6P9L4 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.73■□□□□ 0.91
Retrieved 100 of 76,532 protein–RNA pairs in 39 ms