Protein–RNA interactions for Protein: P58771

Tpm1, Tropomyosin alpha-1 chain, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tpm1P58771 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC20.66■□□□□ 0.9
Tpm1P58771 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC20.66■□□□□ 0.9
Tpm1P58771 Nr2c2ap-201ENSMUST00000095273 1161 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Gm43702-201ENSMUST00000198772 2546 ntBASIC20.66■□□□□ 0.9
Tpm1P58771 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Tpm1P58771 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Tpm1P58771 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC20.65■□□□□ 0.9
Tpm1P58771 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.65■□□□□ 0.9
Tpm1P58771 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.65■□□□□ 0.9
Tpm1P58771 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Tpm1P58771 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Tpm1P58771 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.65■□□□□ 0.9
Tpm1P58771 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Tpm1P58771 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tpm1P58771 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tpm1P58771 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Tpm1P58771 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Tpm1P58771 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC20.64■□□□□ 0.89
Tpm1P58771 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Tpm1P58771 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Tpm1P58771 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Tpm1P58771 AC093043.1-201ENSMUST00000226700 898 ntBASIC20.64■□□□□ 0.89
Tpm1P58771 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC20.64■□□□□ 0.89
Tpm1P58771 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Tpm1P58771 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Tpm1P58771 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Tpm1P58771 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.63■□□□□ 0.89
Tpm1P58771 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Tpm1P58771 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Tpm1P58771 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
Tpm1P58771 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.62■□□□□ 0.89
Tpm1P58771 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC20.62■□□□□ 0.89
Tpm1P58771 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC20.62■□□□□ 0.89
Tpm1P58771 Golgb1-201ENSMUST00000023534 498 ntBASIC20.62■□□□□ 0.89
Tpm1P58771 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Tpm1P58771 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC20.62■□□□□ 0.89
Tpm1P58771 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Tpm1P58771 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Tpm1P58771 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.61■□□□□ 0.89
Tpm1P58771 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
Tpm1P58771 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.61■□□□□ 0.89
Tpm1P58771 Ece2-202ENSMUST00000122306 2495 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Tpm1P58771 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.6■□□□□ 0.89
Tpm1P58771 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.6■□□□□ 0.89
Tpm1P58771 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Tpm1P58771 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20.6■□□□□ 0.89
Tpm1P58771 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Tpm1P58771 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tpm1P58771 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC20.59■□□□□ 0.89
Tpm1P58771 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Tpm1P58771 Gm9207-201ENSMUST00000198773 1115 ntBASIC20.59■□□□□ 0.89
Tpm1P58771 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tpm1P58771 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tpm1P58771 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Tpm1P58771 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Tpm1P58771 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Tpm1P58771 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tpm1P58771 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tpm1P58771 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Tpm1P58771 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
Tpm1P58771 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.58■□□□□ 0.89
Tpm1P58771 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms