Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Clk3O35492 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.62■□□□□ 0.41
Clk3O35492 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Clk3O35492 Lrch2-201ENSMUST00000112819 4892 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Clk3O35492 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clk3O35492 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
Clk3O35492 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC17.61■□□□□ 0.41
Clk3O35492 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
Clk3O35492 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC17.61■□□□□ 0.41
Clk3O35492 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
Clk3O35492 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.61■□□□□ 0.41
Clk3O35492 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Clk3O35492 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.6■□□□□ 0.41
Clk3O35492 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk3O35492 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk3O35492 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.6■□□□□ 0.41
Clk3O35492 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk3O35492 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Clk3O35492 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Clk3O35492 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.6■□□□□ 0.41
Clk3O35492 Fam96b-201ENSMUST00000093234 639 ntTSL 5 BASIC17.6■□□□□ 0.41
Clk3O35492 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Clk3O35492 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.6■□□□□ 0.41
Clk3O35492 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.6■□□□□ 0.41
Clk3O35492 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
Clk3O35492 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Gm15039-201ENSMUST00000118914 875 ntBASIC17.59■□□□□ 0.41
Clk3O35492 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.59■□□□□ 0.41
Clk3O35492 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC17.59■□□□□ 0.41
Clk3O35492 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
Clk3O35492 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.59■□□□□ 0.41
Clk3O35492 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Clk3O35492 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.59■□□□□ 0.41
Clk3O35492 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk3O35492 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Clk3O35492 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
Clk3O35492 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC17.58■□□□□ 0.4
Clk3O35492 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
Clk3O35492 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.58■□□□□ 0.4
Clk3O35492 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Clk3O35492 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Clk3O35492 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
Clk3O35492 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
Clk3O35492 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Clk3O35492 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Clk3O35492 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms