Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd6A3KFM7 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC15.17■□□□□ 0.02
Chd6A3KFM7 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Chd6A3KFM7 Dmtn-209ENSMUST00000228295 2572 ntBASIC15.17■□□□□ 0.02
Chd6A3KFM7 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gm18206-201ENSMUST00000207027 926 ntBASIC15.16■□□□□ 0.02
Chd6A3KFM7 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC15.16■□□□□ 0.02
Chd6A3KFM7 Gm38285-201ENSMUST00000192928 922 ntBASIC15.16■□□□□ 0.02
Chd6A3KFM7 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Drd4-201ENSMUST00000026569 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Chd6A3KFM7 Gm17641-201ENSMUST00000166328 2350 ntBASIC15.14■□□□□ 0.01
Chd6A3KFM7 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Pcbp4-201ENSMUST00000024260 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Gm5913-201ENSMUST00000119397 1399 ntBASIC15.14■□□□□ 0.01
Chd6A3KFM7 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
Chd6A3KFM7 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC15.13■□□□□ 0.01
Chd6A3KFM7 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
Chd6A3KFM7 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Gm43909-201ENSMUST00000203443 1876 ntBASIC15.12■□□□□ 0.01
Chd6A3KFM7 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Znhit1-204ENSMUST00000111091 1070 ntTSL 5 BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Znhit1-206ENSMUST00000156963 1208 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
Chd6A3KFM7 Gm15375-201ENSMUST00000119510 849 ntBASIC15.12■□□□□ 0.01
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms