Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 AC140930.3-201ENSMUST00000222935 274 ntBASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Trbv1A0A0B4J1G7 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Dach1-202ENSMUST00000071533 5219 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
Trbv1A0A0B4J1G7 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Trbv1A0A0B4J1G7 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC14.51□□□□□ -0.09
Trbv1A0A0B4J1G7 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm5576-201ENSMUST00000075809 1236 ntBASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm37352-201ENSMUST00000193908 2181 ntBASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.5□□□□□ -0.09
Trbv1A0A0B4J1G7 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
Trbv1A0A0B4J1G7 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
Trbv1A0A0B4J1G7 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trbv1A0A0B4J1G7 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms