Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Cep170-212ENSMUST00000194727 6784 ntAPPRIS ALT2 TSL 5 BASIC8.12□□□□□ -1.11
Usp4P35123 Gimap4-202ENSMUST00000090070 1804 ntAPPRIS P3 TSL 2 BASIC8.12□□□□□ -1.11
Usp4P35123 Phf3-201ENSMUST00000088310 7561 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Lrrc40-201ENSMUST00000072080 4142 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Msn-201ENSMUST00000117399 3842 ntAPPRIS P1 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Fcrl5-204ENSMUST00000193229 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Tdrkh-201ENSMUST00000045245 2642 ntAPPRIS P2 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Slc12a6-201ENSMUST00000028549 6105 ntAPPRIS P4 TSL 1 (best) BASIC8.12□□□□□ -1.11
Usp4P35123 Gbp2b-201ENSMUST00000029936 2823 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Fchsd2-201ENSMUST00000032931 4453 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 AC126806.1-201ENSMUST00000217349 3869 ntTSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Zhx3-202ENSMUST00000103112 9109 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm31343-201ENSMUST00000207967 2454 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Tpo-201ENSMUST00000021005 3299 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm43251-201ENSMUST00000198339 2712 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm28867-201ENSMUST00000190194 2166 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Erc1-210ENSMUST00000184864 5428 ntAPPRIS ALT1 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Serbp1-201ENSMUST00000042990 15474 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm28055-202ENSMUST00000189576 1301 ntTSL 3 BASIC8.11□□□□□ -1.11
Usp4P35123 Calr4-203ENSMUST00000106629 1583 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm45512-201ENSMUST00000210432 1553 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Gm26849-201ENSMUST00000180561 1842 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Lpp-201ENSMUST00000038053 15647 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm44752-201ENSMUST00000207140 3305 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Gm14414-201ENSMUST00000120833 573 ntBASIC8.11□□□□□ -1.11
Usp4P35123 A930104D05Rik-201ENSMUST00000128601 939 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm12514-201ENSMUST00000142782 568 ntTSL 3 BASIC8.11□□□□□ -1.11
Usp4P35123 Gm15640-201ENSMUST00000152070 527 ntTSL 2 BASIC8.11□□□□□ -1.11
Usp4P35123 Stard6-202ENSMUST00000164223 976 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm17188-202ENSMUST00000165178 680 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm8974-201ENSMUST00000175770 479 ntBASIC8.11□□□□□ -1.11
Usp4P35123 4933406F09Rik-202ENSMUST00000180508 680 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Mir7060-201ENSMUST00000183486 137 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Gm5835-201ENSMUST00000185806 1270 ntBASIC8.11□□□□□ -1.11
Usp4P35123 9930111H07Rik-201ENSMUST00000187270 821 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm20379-201ENSMUST00000188317 1204 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 Tdpoz2-201ENSMUST00000191960 1145 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 Gm17970-201ENSMUST00000192199 685 ntBASIC8.11□□□□□ -1.11
Usp4P35123 1700008B11Rik-201ENSMUST00000198145 634 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Gm42489-201ENSMUST00000198964 669 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Olfr1245-201ENSMUST00000214870 1062 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 AC129597.1-201ENSMUST00000223046 1234 ntBASIC8.11□□□□□ -1.11
Usp4P35123 AC163660.3-202ENSMUST00000224917 464 ntBASIC8.11□□□□□ -1.11
Usp4P35123 AC154760.1-201ENSMUST00000227218 673 ntBASIC8.11□□□□□ -1.11
Usp4P35123 1700123O20Rik-203ENSMUST00000227269 893 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 Med21-201ENSMUST00000032429 814 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 4930556J24Rik-201ENSMUST00000042344 1220 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Timm8b-201ENSMUST00000044051 518 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Olfr24-201ENSMUST00000066997 1157 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 Gm10123-201ENSMUST00000075723 490 ntBASIC8.11□□□□□ -1.11
Usp4P35123 Vmn1r188-201ENSMUST00000091739 927 ntAPPRIS P1 BASIC8.11□□□□□ -1.11
Usp4P35123 Nt5c1b-220ENSMUST00000223534 1798 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Mpdz-216ENSMUST00000220807 6295 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Arhgef9-209ENSMUST00000181987 6222 ntTSL 2 BASIC8.11□□□□□ -1.11
Usp4P35123 Olfr305-204ENSMUST00000216700 3734 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Olfr316-202ENSMUST00000215071 2719 ntAPPRIS P1 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Cyp19a1-203ENSMUST00000215736 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Wdr72-205ENSMUST00000215440 5160 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Kcnk10-202ENSMUST00000221240 7460 ntAPPRIS P2 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Bdnf-203ENSMUST00000111043 3839 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm14280-201ENSMUST00000138080 1444 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Bdnf-207ENSMUST00000111047 4042 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Camk2d-205ENSMUST00000106401 3059 ntTSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Psg19-201ENSMUST00000004657 2105 ntAPPRIS P1 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Patj-203ENSMUST00000102792 3755 ntTSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Acox3-210ENSMUST00000202266 3501 ntAPPRIS ALT2 TSL 5 BASIC8.11□□□□□ -1.11
Usp4P35123 Slco2b1-202ENSMUST00000107086 3993 ntAPPRIS P3 TSL 1 (best) BASIC8.11□□□□□ -1.11
Usp4P35123 Gm32389-201ENSMUST00000209312 1621 ntTSL 3 BASIC8.11□□□□□ -1.11
Usp4P35123 AI182371-207ENSMUST00000226972 1642 ntAPPRIS ALT2 BASIC8.11□□□□□ -1.11
Usp4P35123 Vmn1r197-202ENSMUST00000226225 5326 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Usp4P35123 Stxbp4-202ENSMUST00000107872 2529 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 AC165260.6-202ENSMUST00000224959 1958 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Cflar-205ENSMUST00000114313 6572 ntAPPRIS P2 TSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 Drp2-203ENSMUST00000113226 3499 ntAPPRIS P1 TSL 5 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm43123-201ENSMUST00000201893 3471 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Serpina3a-203ENSMUST00000185595 1720 ntAPPRIS P1 TSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm13526-201ENSMUST00000117970 189 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm15719-201ENSMUST00000120619 635 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm13726-201ENSMUST00000121278 794 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm24380-201ENSMUST00000122696 324 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Rubie-201ENSMUST00000151828 1137 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 Gm23027-201ENSMUST00000158771 158 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Olfr270-202ENSMUST00000172257 939 ntAPPRIS P2 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm9399-201ENSMUST00000175771 639 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm26671-201ENSMUST00000180423 1157 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 Gm29290-201ENSMUST00000185385 597 ntTSL 3 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm18970-201ENSMUST00000186040 938 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm29739-201ENSMUST00000191760 529 ntBASIC8.1□□□□□ -1.11
Usp4P35123 1700113A16Rik-202ENSMUST00000197172 776 ntTSL 2 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm43192-201ENSMUST00000198002 637 ntTSL 3 BASIC8.1□□□□□ -1.11
Usp4P35123 Mef2c-219ENSMUST00000198217 1257 ntTSL 5 BASIC8.1□□□□□ -1.11
Usp4P35123 Mef2c-225ENSMUST00000199210 1185 ntTSL 5 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm42558-201ENSMUST00000200982 265 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Gm43461-201ENSMUST00000202351 996 ntBASIC8.1□□□□□ -1.11
Usp4P35123 A930014E10Rik-201ENSMUST00000205115 546 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Usp4P35123 Gm34225-203ENSMUST00000206921 572 ntTSL 5 BASIC8.1□□□□□ -1.11
Usp4P35123 Gm44508-201ENSMUST00000206943 1157 ntBASIC8.1□□□□□ -1.11
Usp4P35123 Olfr471-201ENSMUST00000210091 936 ntBASIC8.1□□□□□ -1.11
Usp4P35123 AC160105.1-201ENSMUST00000221931 682 ntTSL 1 (best) BASIC8.1□□□□□ -1.11
Retrieved 100 of 76,532 protein–RNA pairs in 51.3 ms