Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Dqx1-201ENSMUST00000077502 3257 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Cux1P53564 Trub1-202ENSMUST00000026073 3795 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 Clasp1-205ENSMUST00000185405 4597 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Cux1P53564 Vps39-201ENSMUST00000028752 4339 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 Cst8-202ENSMUST00000109947 804 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
Cux1P53564 Gm15209-201ENSMUST00000117703 400 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Gm5752-201ENSMUST00000117771 594 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Gm5611-201ENSMUST00000164523 852 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Mir5617-201ENSMUST00000176786 57 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Traf1-209ENSMUST00000201690 386 ntTSL 3 BASIC11.54□□□□□ -0.56
Cux1P53564 Gm18562-201ENSMUST00000209949 915 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Gm4972-201ENSMUST00000211108 1254 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Gm39465-202ENSMUST00000215177 470 ntTSL 5 BASIC11.54□□□□□ -0.56
Cux1P53564 Nqo2-204ENSMUST00000222740 995 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 CT009550.2-201ENSMUST00000228851 399 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Gm9985-201ENSMUST00000044101 510 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Insig2-202ENSMUST00000071064 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 Dpp6-203ENSMUST00000120555 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 Zfyve16-201ENSMUST00000022217 6150 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Cux1P53564 AC166574.5-201ENSMUST00000227438 1432 ntBASIC11.54□□□□□ -0.56
Cux1P53564 Sall1-201ENSMUST00000034090 5265 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 AC107740.1-201ENSMUST00000216972 2401 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 C1s1-204ENSMUST00000162443 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Olfr266-203ENSMUST00000216610 1520 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 Mycbpap-202ENSMUST00000093945 3168 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 St8sia4-201ENSMUST00000043336 5390 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 4930548H24Rik-201ENSMUST00000031020 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Abr-201ENSMUST00000065028 4444 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 4930553P18Rik-201ENSMUST00000201164 1659 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Olfr460-202ENSMUST00000216942 3370 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 E330035G20Rik-201ENSMUST00000221094 3002 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Prelid3b-202ENSMUST00000117442 683 ntTSL 3 BASIC11.53□□□□□ -0.56
Cux1P53564 Gm12713-201ENSMUST00000118404 764 ntBASIC11.53□□□□□ -0.56
Cux1P53564 Gm25989-201ENSMUST00000158761 133 ntBASIC11.53□□□□□ -0.56
Cux1P53564 Gml-202ENSMUST00000164026 895 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Cux1P53564 Gm7289-201ENSMUST00000168993 734 ntBASIC11.53□□□□□ -0.56
Cux1P53564 Gm28289-201ENSMUST00000189331 315 ntTSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 Gm6213-201ENSMUST00000209966 638 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Gm45900-201ENSMUST00000211879 409 ntBASIC11.53□□□□□ -0.56
Cux1P53564 AC115304.1-202ENSMUST00000226850 837 ntBASIC11.53□□□□□ -0.56
Cux1P53564 1700102P08Rik-201ENSMUST00000035234 1101 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Hamp2-201ENSMUST00000074671 420 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Sult2a3-201ENSMUST00000098809 1018 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 Usp40-204ENSMUST00000187758 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Gm18726-201ENSMUST00000218175 2010 ntBASIC11.53□□□□□ -0.56
Cux1P53564 Dlk1-206ENSMUST00000109846 4106 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Gm20754-202ENSMUST00000192642 1357 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Gm45175-201ENSMUST00000208295 1375 ntTSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 Scn3b-201ENSMUST00000049941 4150 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Dyrk1a-201ENSMUST00000023614 5754 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Cux1P53564 BC016579-201ENSMUST00000036732 2192 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Dcp1a-201ENSMUST00000022535 5576 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Cux1P53564 Gm43890-201ENSMUST00000203437 2799 ntBASIC11.52□□□□□ -0.56
Cux1P53564 Pcdh15-228ENSMUST00000152819 2867 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Cux1P53564 Sox6-212ENSMUST00000206369 2863 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Cux1P53564 Dctn4-204ENSMUST00000223984 2948 ntAPPRIS ALT1 BASIC11.52□□□□□ -0.56
Cux1P53564 Cttnbp2-201ENSMUST00000090601 5183 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cux1P53564 9230020A06Rik-201ENSMUST00000151841 2051 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Cux1P53564 4921525O09Rik-201ENSMUST00000220691 3270 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Cux1P53564 Zfp37-201ENSMUST00000068822 3494 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Cux1P53564 Morc2b-201ENSMUST00000053896 3712 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Zzef1-201ENSMUST00000069395 11150 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.57
Cux1P53564 Far1-201ENSMUST00000033018 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cux1P53564 Gm14863-201ENSMUST00000119648 307 ntBASIC11.52□□□□□ -0.57
Cux1P53564 Gm25660-201ENSMUST00000158470 104 ntBASIC11.52□□□□□ -0.57
Cux1P53564 9430069I07Rik-201ENSMUST00000179647 336 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Cux1P53564 AC099934.1-201ENSMUST00000200493 79 ntBASIC11.52□□□□□ -0.57
Cux1P53564 4930465I24Rik-201ENSMUST00000209697 426 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 9430069I07Rik-202ENSMUST00000227772 572 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Cux1P53564 Ifit1-201ENSMUST00000102824 2656 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Sec22c-201ENSMUST00000078547 5713 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Ceacam20-201ENSMUST00000094753 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 CT010505.3-201ENSMUST00000227835 1651 ntBASIC11.52□□□□□ -0.57
Cux1P53564 5430420F09Rik-201ENSMUST00000194956 1799 ntBASIC11.52□□□□□ -0.57
Cux1P53564 Gm44117-201ENSMUST00000204442 1758 ntBASIC11.52□□□□□ -0.57
Cux1P53564 Olfr399-202ENSMUST00000215915 1796 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Cux1P53564 Tiam1-201ENSMUST00000002588 7290 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Smc1b-201ENSMUST00000023068 4047 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Rbm28-201ENSMUST00000007993 4465 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Gm20731-201ENSMUST00000193462 2288 ntBASIC11.52□□□□□ -0.57
Cux1P53564 Grik2-201ENSMUST00000079751 2610 ntTSL 2 BASIC11.52□□□□□ -0.57
Cux1P53564 Gm10637-202ENSMUST00000184702 3233 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Slc6a5-203ENSMUST00000207753 6966 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Cux1P53564 Adam22-202ENSMUST00000050166 8969 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cux1P53564 Macrod2os1-201ENSMUST00000151538 3131 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cux1P53564 Gm12526-201ENSMUST00000154462 615 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cux1P53564 Gm26353-201ENSMUST00000158224 255 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Gm8550-201ENSMUST00000161621 653 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Vmn2r44-201ENSMUST00000166499 3660 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Cux1P53564 Gm5861-201ENSMUST00000168407 1016 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Cux1P53564 Gm26749-201ENSMUST00000181387 1933 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cux1P53564 4930568A12Rik-202ENSMUST00000188292 926 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Cux1P53564 Gm28416-201ENSMUST00000188334 292 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Gm38302-201ENSMUST00000191676 2076 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Gm7369-201ENSMUST00000192738 936 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Dsg4-201ENSMUST00000019426 3478 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Cux1P53564 Gm37535-201ENSMUST00000194442 2365 ntBASIC11.51□□□□□ -0.57
Cux1P53564 Gm10419-204ENSMUST00000198585 4059 ntTSL 2 BASIC11.51□□□□□ -0.57
Cux1P53564 Gm43609-201ENSMUST00000199084 2712 ntBASIC11.51□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms