Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 AL050303.2-201ENST00000619798 666 ntBASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC27.28■■□□□ 1.96
PDZRN3Q9UPQ7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 TSPY20P-201ENST00000450910 630 ntBASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 OAS3-207ENST00000551007 998 ntTSL 2 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 SLC7A5P2-201ENST00000553010 536 ntBASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC27.27■■□□□ 1.96
PDZRN3Q9UPQ7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 AC007322.1-201ENST00000426983 750 ntBASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 RGMA-211ENST00000557420 989 ntTSL 3 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 EFS-203ENST00000429593 2610 ntTSL 2 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC27.26■■□□□ 1.95
PDZRN3Q9UPQ7 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 DUX4L16-201ENST00000555130 1264 ntBASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC27.25■■□□□ 1.95
PDZRN3Q9UPQ7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 GUSBP6-202ENST00000438529 1198 ntBASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 BID-212ENST00000614949 1988 ntTSL 5 BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
PDZRN3Q9UPQ7 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 KRT87P-202ENST00000534226 1464 ntBASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC27.23■■□□□ 1.95
PDZRN3Q9UPQ7 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 METTL15-202ENST00000403099 795 ntTSL 5 BASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 AC005181.1-201ENST00000604782 1256 ntBASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
PDZRN3Q9UPQ7 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 SLC29A4P1-201ENST00000398760 971 ntBASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 AC009237.3-201ENST00000393279 1427 ntBASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PDZRN3Q9UPQ7 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.95
PDZRN3Q9UPQ7 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
PDZRN3Q9UPQ7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms