Protein–RNA interactions for Protein: Q9R1N9

Col13a1, Collagen alpha-1(XIII) chain, mousemouse

Predictions only

Length 751 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col13a1Q9R1N9 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Col13a1Q9R1N9 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Gm10698-201ENSMUST00000182663 604 ntBASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col13a1Q9R1N9 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col13a1Q9R1N9 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Gm20472-201ENSMUST00000174403 1240 ntBASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col13a1Q9R1N9 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Pomgnt1-203ENSMUST00000106498 2719 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Gm21362-201ENSMUST00000194272 928 ntBASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
Col13a1Q9R1N9 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Nrn1-203ENSMUST00000223611 1443 ntBASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
Col13a1Q9R1N9 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Dio3-201ENSMUST00000097228 1449 ntBASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Col13a1Q9R1N9 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col13a1Q9R1N9 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC15.72■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 74.3 ms