Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lima1Q9ERG0 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lima1Q9ERG0 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Gm42911-201ENSMUST00000199360 1630 ntBASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lima1Q9ERG0 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Wdr70-203ENSMUST00000227371 1130 ntBASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Gm43702-201ENSMUST00000198772 2546 ntBASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
Lima1Q9ERG0 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lima1Q9ERG0 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Psmg4-202ENSMUST00000147632 555 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lima1Q9ERG0 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Papola-203ENSMUST00000163473 2544 ntTSL 5 BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Ubtf-206ENSMUST00000107123 2759 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
Lima1Q9ERG0 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Gm7856-201ENSMUST00000117514 1493 ntBASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Gm43213-201ENSMUST00000151866 1790 ntBASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Gm43173-201ENSMUST00000202246 593 ntBASIC18.28■□□□□ 0.52
Lima1Q9ERG0 Gm45417-201ENSMUST00000209533 758 ntBASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms