Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Gm12669-201ENSMUST00000122162 1009 ntBASIC17.22■□□□□ 0.35
Cdc40Q9DC48 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdc40Q9DC48 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Gm7860-201ENSMUST00000121190 879 ntBASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cdc40Q9DC48 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.21■□□□□ 0.34
Cdc40Q9DC48 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cdc40Q9DC48 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Cdc40Q9DC48 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Cdc40Q9DC48 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Cdc40Q9DC48 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Cdc40Q9DC48 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Cdc40Q9DC48 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC17.17■□□□□ 0.34
Cdc40Q9DC48 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 CT010467.1-202ENSMUST00000205406 714 ntBASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
Cdc40Q9DC48 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Tal1-204ENSMUST00000162489 2894 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Cdc40Q9DC48 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms