Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm10033-202ENSMUST00000211874 928 ntBASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Ddx56Q9D0R4 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 P2rx4-202ENSMUST00000081554 1887 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Gm18671-201ENSMUST00000214826 683 ntBASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.56■□□□□ 0.72
Ddx56Q9D0R4 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Ddx56Q9D0R4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 6030445D17Rik-201ENSMUST00000084593 1728 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Gm18284-201ENSMUST00000172604 624 ntBASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Ddx56Q9D0R4 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Ap3s1-204ENSMUST00000225520 957 ntBASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Ddx56Q9D0R4 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Gm10655-201ENSMUST00000098658 1397 ntBASIC19.52■□□□□ 0.72
Ddx56Q9D0R4 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ddx56Q9D0R4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Ddx56Q9D0R4 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Ddx56Q9D0R4 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Ddx56Q9D0R4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.49■□□□□ 0.71
Ddx56Q9D0R4 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 37.4 ms