Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Use1Q9CQ56 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Gm12821-201ENSMUST00000120022 600 ntBASIC17.55■□□□□ 0.4
Use1Q9CQ56 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.55■□□□□ 0.4
Use1Q9CQ56 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
Use1Q9CQ56 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Use1Q9CQ56 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Gm7856-201ENSMUST00000117514 1493 ntBASIC17.54■□□□□ 0.4
Use1Q9CQ56 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Actl6a-201ENSMUST00000029214 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Use1Q9CQ56 Naif1-201ENSMUST00000048431 4650 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Gm43173-201ENSMUST00000202246 593 ntBASIC17.53■□□□□ 0.4
Use1Q9CQ56 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Grip1-201ENSMUST00000041962 5343 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Use1Q9CQ56 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Use1Q9CQ56 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.39
Use1Q9CQ56 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC17.51■□□□□ 0.39
Use1Q9CQ56 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Use1Q9CQ56 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.5■□□□□ 0.39
Use1Q9CQ56 Gm15853-202ENSMUST00000195518 2041 ntBASIC17.5■□□□□ 0.39
Use1Q9CQ56 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Use1Q9CQ56 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Use1Q9CQ56 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Use1Q9CQ56 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms