Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Trim56Q80VI1 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Gm26524-201ENSMUST00000192339 390 ntBASIC22.04■■□□□ 1.12
Trim56Q80VI1 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Trim56Q80VI1 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC22.03■■□□□ 1.12
Trim56Q80VI1 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Pacsin3-203ENSMUST00000111349 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
Trim56Q80VI1 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trim56Q80VI1 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trim56Q80VI1 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Trim56Q80VI1 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
Trim56Q80VI1 Gm4968-201ENSMUST00000071458 858 ntBASIC22.02■■□□□ 1.12
Trim56Q80VI1 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC22.02■■□□□ 1.12
Trim56Q80VI1 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC22.02■■□□□ 1.11
Trim56Q80VI1 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC22.02■■□□□ 1.11
Trim56Q80VI1 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Gm8309-201ENSMUST00000206627 1448 ntBASIC22.01■■□□□ 1.11
Trim56Q80VI1 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Trim56Q80VI1 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
Trim56Q80VI1 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC22■■□□□ 1.11
Trim56Q80VI1 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC22■■□□□ 1.11
Trim56Q80VI1 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Gm43231-201ENSMUST00000202960 2258 ntBASIC22■■□□□ 1.11
Trim56Q80VI1 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
Trim56Q80VI1 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Trim56Q80VI1 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC21.99■■□□□ 1.11
Trim56Q80VI1 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.99■■□□□ 1.11
Trim56Q80VI1 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Trim56Q80VI1 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Gm5408-201ENSMUST00000197998 747 ntBASIC21.98■■□□□ 1.11
Trim56Q80VI1 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Gm10616-201ENSMUST00000205285 2127 ntBASIC21.98■■□□□ 1.11
Trim56Q80VI1 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
Trim56Q80VI1 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 AC122769.4-201ENSMUST00000228166 901 ntBASIC21.97■■□□□ 1.11
Trim56Q80VI1 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
Trim56Q80VI1 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC21.96■■□□□ 1.11
Trim56Q80VI1 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms