Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Usp49Q6P9L4 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Usp49Q6P9L4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp49Q6P9L4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Usp49Q6P9L4 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp49Q6P9L4 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.89■□□□□ 0.93
Usp49Q6P9L4 Gm10033-202ENSMUST00000211874 928 ntBASIC20.89■□□□□ 0.93
Usp49Q6P9L4 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Usp49Q6P9L4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Usp49Q6P9L4 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Usp49Q6P9L4 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Usp49Q6P9L4 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Gm42778-201ENSMUST00000199644 553 ntBASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Usp49Q6P9L4 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Usp49Q6P9L4 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Usp49Q6P9L4 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp49Q6P9L4 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp49Q6P9L4 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.83■□□□□ 0.93
Usp49Q6P9L4 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
Usp49Q6P9L4 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.83■□□□□ 0.93
Usp49Q6P9L4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp49Q6P9L4 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
Usp49Q6P9L4 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
Usp49Q6P9L4 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC20.83■□□□□ 0.92
Usp49Q6P9L4 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Usp49Q6P9L4 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Gm5874-201ENSMUST00000096101 508 ntBASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Usp49Q6P9L4 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Gm42642-201ENSMUST00000200683 355 ntBASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Usp49Q6P9L4 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms