Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Gm5784-201ENSMUST00000179344 2478 ntBASIC19.42■□□□□ 0.7
Hmgb4Q6P8W9 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Gm27032-201ENSMUST00000183124 1116 ntBASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Bex2-201ENSMUST00000049130 903 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Hmgb4Q6P8W9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Gm13168-201ENSMUST00000121771 632 ntBASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Hmgb4Q6P8W9 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb4Q6P8W9 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb4Q6P8W9 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Hmgb4Q6P8W9 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Gm37563-201ENSMUST00000192580 1513 ntBASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Hmgb4Q6P8W9 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Mrps18a-202ENSMUST00000123646 621 ntTSL 2 BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Gm37856-201ENSMUST00000191634 999 ntBASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Hmgb4Q6P8W9 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Hmgb4Q6P8W9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Gm32699-201ENSMUST00000221728 1988 ntBASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Gm26524-201ENSMUST00000192339 390 ntBASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Hmgb4Q6P8W9 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Gm26971-201ENSMUST00000182423 1072 ntBASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Trmt13-210ENSMUST00000198454 880 ntBASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Rab3c-203ENSMUST00000224180 967 ntBASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Hmgb4Q6P8W9 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 35.3 ms