Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Tgif1-209ENSMUST00000166395 1714 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Rnf40Q3U319 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Rnf40Q3U319 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf40Q3U319 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Rnf40Q3U319 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC19.26■□□□□ 0.67
Rnf40Q3U319 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Rnf40Q3U319 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Rnf40Q3U319 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Rnf40Q3U319 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Gm42790-201ENSMUST00000201268 969 ntBASIC19.23■□□□□ 0.67
Rnf40Q3U319 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Rnf40Q3U319 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Smim10l1-201ENSMUST00000100864 2842 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Rnf40Q3U319 Gm43294-201ENSMUST00000202850 2490 ntBASIC19.22■□□□□ 0.67
Rnf40Q3U319 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
Rnf40Q3U319 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Rnf40Q3U319 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Rnf40Q3U319 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Rnf40Q3U319 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms