Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col6a1Q04857 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Col6a1Q04857 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Col6a1Q04857 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a1Q04857 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
Col6a1Q04857 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a1Q04857 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a1Q04857 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a1Q04857 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Col6a1Q04857 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC20.55■□□□□ 0.88
Col6a1Q04857 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.55■□□□□ 0.88
Col6a1Q04857 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Col6a1Q04857 CT010444.2-201ENSMUST00000217877 1629 ntBASIC20.55■□□□□ 0.88
Col6a1Q04857 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.55■□□□□ 0.88
Col6a1Q04857 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Whrn-204ENSMUST00000095037 2419 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC20.54■□□□□ 0.88
Col6a1Q04857 Gm6433-201ENSMUST00000118634 875 ntBASIC20.54■□□□□ 0.88
Col6a1Q04857 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Col6a1Q04857 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Gm20472-201ENSMUST00000174403 1240 ntBASIC20.54■□□□□ 0.88
Col6a1Q04857 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col6a1Q04857 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
Col6a1Q04857 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.54■□□□□ 0.88
Col6a1Q04857 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Col6a1Q04857 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a1Q04857 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
Col6a1Q04857 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a1Q04857 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC20.53■□□□□ 0.88
Col6a1Q04857 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Col6a1Q04857 H2-K2-201ENSMUST00000174250 1049 ntBASIC20.53■□□□□ 0.88
Col6a1Q04857 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a1Q04857 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a1Q04857 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col6a1Q04857 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a1Q04857 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.52■□□□□ 0.88
Col6a1Q04857 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a1Q04857 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a1Q04857 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC20.52■□□□□ 0.88
Col6a1Q04857 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a1Q04857 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col6a1Q04857 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a1Q04857 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a1Q04857 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a1Q04857 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Col6a1Q04857 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Mir5122-201ENSMUST00000175004 89 ntBASIC20.51■□□□□ 0.87
Col6a1Q04857 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a1Q04857 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a1Q04857 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a1Q04857 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col6a1Q04857 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
Col6a1Q04857 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.5■□□□□ 0.87
Col6a1Q04857 Gm2399-201ENSMUST00000104944 225 ntBASIC20.5■□□□□ 0.87
Col6a1Q04857 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
Col6a1Q04857 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col6a1Q04857 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.5■□□□□ 0.87
Col6a1Q04857 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
Col6a1Q04857 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC20.49■□□□□ 0.87
Col6a1Q04857 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Gm10819-201ENSMUST00000099988 561 ntBASIC20.49■□□□□ 0.87
Col6a1Q04857 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Col6a1Q04857 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col6a1Q04857 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC20.48■□□□□ 0.87
Col6a1Q04857 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC20.48■□□□□ 0.87
Col6a1Q04857 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Col6a1Q04857 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC20.48■□□□□ 0.87
Col6a1Q04857 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC20.48■□□□□ 0.87
Col6a1Q04857 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC20.48■□□□□ 0.87
Col6a1Q04857 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col6a1Q04857 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 12.9 ms