Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx3P48381 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx3P48381 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx3P48381 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Rfx3P48381 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Rfx3P48381 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC16.78■□□□□ 0.28
Rfx3P48381 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC16.78■□□□□ 0.28
Rfx3P48381 Gm26833-201ENSMUST00000180899 440 ntBASIC16.78■□□□□ 0.28
Rfx3P48381 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Rfx3P48381 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Rfx3P48381 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC16.77■□□□□ 0.28
Rfx3P48381 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.77■□□□□ 0.28
Rfx3P48381 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
Rfx3P48381 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Rfx3P48381 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Rfx3P48381 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
Rfx3P48381 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Rfx3P48381 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Rfx3P48381 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.77■□□□□ 0.27
Rfx3P48381 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx3P48381 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx3P48381 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx3P48381 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Rfx3P48381 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Gm27801-201ENSMUST00000184174 223 ntBASIC16.76■□□□□ 0.27
Rfx3P48381 Gm43017-201ENSMUST00000198296 752 ntBASIC16.76■□□□□ 0.27
Rfx3P48381 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Rfx3P48381 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Rfx3P48381 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Rfx3P48381 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Rfx3P48381 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Rfx3P48381 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Gm37352-201ENSMUST00000193908 2181 ntBASIC16.75■□□□□ 0.27
Rfx3P48381 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
Rfx3P48381 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
Rfx3P48381 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Rfx3P48381 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.75■□□□□ 0.27
Rfx3P48381 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Rfx3P48381 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Rfx3P48381 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Rfx3P48381 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Rfx3P48381 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Rfx3P48381 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Rfx3P48381 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC16.74■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms