Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Sox6P40645 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC17.43■□□□□ 0.38
Sox6P40645 AC137127.1-201ENSMUST00000213466 1078 ntBASIC17.43■□□□□ 0.38
Sox6P40645 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Sox6P40645 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Sox6P40645 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Sox6P40645 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC17.42■□□□□ 0.38
Sox6P40645 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.42■□□□□ 0.38
Sox6P40645 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Sox6P40645 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Sox6P40645 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC17.41■□□□□ 0.38
Sox6P40645 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Sox6P40645 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.41■□□□□ 0.38
Sox6P40645 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.41■□□□□ 0.38
Sox6P40645 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Sox6P40645 BC021767-201ENSMUST00000126387 1716 ntBASIC17.41■□□□□ 0.38
Sox6P40645 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Sox6P40645 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.41■□□□□ 0.38
Sox6P40645 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Sox6P40645 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Sox6P40645 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.4■□□□□ 0.38
Sox6P40645 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.4■□□□□ 0.38
Sox6P40645 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Sox6P40645 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.4■□□□□ 0.38
Sox6P40645 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.4■□□□□ 0.38
Sox6P40645 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
Sox6P40645 AC154266.1-201ENSMUST00000223190 503 ntBASIC17.4■□□□□ 0.38
Sox6P40645 Serp2-204ENSMUST00000228055 705 ntBASIC17.4■□□□□ 0.38
Sox6P40645 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Sox6P40645 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
Sox6P40645 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Sox6P40645 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Sox6P40645 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC17.39■□□□□ 0.37
Sox6P40645 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Cdc34b-202ENSMUST00000188741 1252 ntBASIC17.39■□□□□ 0.37
Sox6P40645 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Sox6P40645 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Sox6P40645 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.38■□□□□ 0.37
Sox6P40645 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Gm40848-201ENSMUST00000221998 324 ntBASIC17.38■□□□□ 0.37
Sox6P40645 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Sox6P40645 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Sox6P40645 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Sox6P40645 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox6P40645 Gm5953-201ENSMUST00000220644 2616 ntBASIC17.37■□□□□ 0.37
Sox6P40645 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Sox6P40645 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 21 ms