Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC14.42□□□□□ -0.1
Hoxd3P09027 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC14.42□□□□□ -0.1
Hoxd3P09027 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC14.42□□□□□ -0.1
Hoxd3P09027 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
Hoxd3P09027 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC14.41□□□□□ -0.1
Hoxd3P09027 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm28819-201ENSMUST00000186691 572 ntTSL 5 BASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm28840-208ENSMUST00000191514 738 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm19094-201ENSMUST00000209791 1246 ntBASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
Hoxd3P09027 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Hoxd3P09027 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Gm13509-201ENSMUST00000119733 1308 ntBASIC14.41□□□□□ -0.1
Hoxd3P09027 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Hoxd3P09027 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Hoxd3P09027 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Hoxd3P09027 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Hoxd3P09027 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Gm37563-201ENSMUST00000192580 1513 ntBASIC14.4□□□□□ -0.1
Hoxd3P09027 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Hoxd3P09027 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC14.39□□□□□ -0.11
Hoxd3P09027 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
Hoxd3P09027 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Hoxd3P09027 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC14.38□□□□□ -0.11
Hoxd3P09027 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Hoxd3P09027 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
Hoxd3P09027 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
Hoxd3P09027 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Gm26524-201ENSMUST00000192339 390 ntBASIC14.38□□□□□ -0.11
Hoxd3P09027 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 AC122769.4-201ENSMUST00000228166 901 ntBASIC14.38□□□□□ -0.11
Hoxd3P09027 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Hoxd3P09027 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms