Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm43553-201ENSMUST00000200900 685 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Gm43904-201ENSMUST00000204945 379 ntTSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm19217-201ENSMUST00000218238 328 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Gm6991-201ENSMUST00000218475 1178 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 AC156559.2-201ENSMUST00000224403 384 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Vmn1r74-201ENSMUST00000050416 915 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col18a1P39061 Olfr958-201ENSMUST00000062545 942 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm6436-201ENSMUST00000077163 451 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Olfr653-201ENSMUST00000098174 1046 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col18a1P39061 Cnr2-201ENSMUST00000068830 3756 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Sipa1l1-210ENSMUST00000222714 6002 ntAPPRIS P3 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Qars-201ENSMUST00000006838 2800 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm26544-201ENSMUST00000181404 2763 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Fam47c-201ENSMUST00000105110 1639 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col18a1P39061 Olfr607-202ENSMUST00000214347 5706 ntAPPRIS P5 TSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Myom3-201ENSMUST00000105854 5575 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm10600-201ENSMUST00000117202 2047 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
Col18a1P39061 Zfp148-201ENSMUST00000089677 4032 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Sel1l-204ENSMUST00000167466 5544 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Ulk4-201ENSMUST00000051479 3898 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Trak1-201ENSMUST00000045903 4827 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Slc29a3-201ENSMUST00000117513 5240 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm19028-201ENSMUST00000189614 1873 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Pde5a-201ENSMUST00000066728 6939 ntAPPRIS P2 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm14925-201ENSMUST00000120611 438 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Gm12920-201ENSMUST00000121818 1186 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Gm14547-201ENSMUST00000138341 371 ntTSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm10177-201ENSMUST00000160052 444 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Six3os1-204ENSMUST00000161688 567 ntTSL 3 BASIC10.24□□□□□ -0.77
Col18a1P39061 Fabp12-204ENSMUST00000172126 779 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm26505-201ENSMUST00000176208 166 ntBASIC10.24□□□□□ -0.77
Col18a1P39061 Mocs2-212ENSMUST00000184214 551 ntTSL 3 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm6639-201ENSMUST00000196349 429 ntTSL 3 BASIC10.24□□□□□ -0.77
Col18a1P39061 Spcs2-203ENSMUST00000207137 881 ntTSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Gm39271-201ENSMUST00000212881 434 ntTSL 3 BASIC10.24□□□□□ -0.77
Col18a1P39061 Olfr738-202ENSMUST00000214320 2114 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Sox6-206ENSMUST00000205405 2903 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
Col18a1P39061 Lrrc66-201ENSMUST00000087177 3198 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Clasp2-203ENSMUST00000166734 4108 ntAPPRIS P3 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm2108-201ENSMUST00000165058 2177 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Atf7-203ENSMUST00000169033 2165 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm29654-201ENSMUST00000186886 2169 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Sdhaf3-201ENSMUST00000040826 4323 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Def8-205ENSMUST00000108832 3242 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Def8-201ENSMUST00000001522 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Def8-204ENSMUST00000108830 3191 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm7265-201ENSMUST00000192735 3502 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Nup98-203ENSMUST00000210682 6694 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Nif3l1-201ENSMUST00000087521 3769 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Muc13-202ENSMUST00000115044 2969 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Plxna1-201ENSMUST00000049845 5810 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm10118-201ENSMUST00000079279 2569 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm24519-201ENSMUST00000104507 132 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Gm2178-201ENSMUST00000104927 357 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 4930578G10Rik-202ENSMUST00000107984 762 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm3476-201ENSMUST00000112742 853 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm13196-201ENSMUST00000118297 379 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Gm8662-201ENSMUST00000118644 574 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Gm12629-201ENSMUST00000145751 711 ntTSL 3 BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm4340-202ENSMUST00000181036 1197 ntAPPRIS ALT2 TSL 3 BASIC10.23□□□□□ -0.77
Col18a1P39061 Arhgap26-218ENSMUST00000187912 312 ntTSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 AV026068-219ENSMUST00000224148 933 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 AC154642.1-201ENSMUST00000224173 740 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Olfr600-201ENSMUST00000056222 948 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
Col18a1P39061 Defb34-201ENSMUST00000064475 246 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Egf-201ENSMUST00000029653 4761 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm26896-201ENSMUST00000180482 2526 ntTSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Crnn-203ENSMUST00000195515 1863 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Vgll1-203ENSMUST00000114746 2151 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 BC085271-201ENSMUST00000191852 1487 ntBASIC10.23□□□□□ -0.77
Col18a1P39061 Ssbp1-202ENSMUST00000114779 4398 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
Col18a1P39061 Gm7980-201ENSMUST00000168107 1403 ntAPPRIS P1 TSL 5 BASIC10.23□□□□□ -0.77
Col18a1P39061 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm42969-201ENSMUST00000199858 3631 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Slc22a21-201ENSMUST00000076493 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm37949-201ENSMUST00000192808 2091 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Arhgef3-202ENSMUST00000224981 3618 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Col18a1P39061 Cep95-202ENSMUST00000103068 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Trim66-201ENSMUST00000033339 4354 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Scml4-201ENSMUST00000063063 4885 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Igkv15-103-201ENSMUST00000103324 375 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Col18a1P39061 Ighv11-2-201ENSMUST00000103468 461 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Col18a1P39061 Synj2bp-202ENSMUST00000114201 1121 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Pfn2-204ENSMUST00000122210 810 ntTSL 3 BASIC10.22□□□□□ -0.77
Col18a1P39061 Ino80c-202ENSMUST00000125169 756 ntTSL 3 BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm22847-201ENSMUST00000157707 105 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Rps12-ps22-201ENSMUST00000179382 402 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Gm44075-201ENSMUST00000204208 216 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Gm44971-201ENSMUST00000206192 337 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 CT009733.1-202ENSMUST00000224941 441 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Olfr671-201ENSMUST00000078710 942 ntAPPRIS P1 BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm28906-201ENSMUST00000191371 1779 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Gm15127-201ENSMUST00000101186 2026 ntAPPRIS P2 TSL 5 BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm15091-201ENSMUST00000112740 2026 ntAPPRIS P1 TSL 5 BASIC10.22□□□□□ -0.77
Col18a1P39061 Gm15109-201ENSMUST00000133085 2026 ntBASIC10.22□□□□□ -0.77
Col18a1P39061 Apobec3-204ENSMUST00000175714 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Golga1-201ENSMUST00000039165 4869 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Kdm5d-207ENSMUST00000189069 2177 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
Col18a1P39061 Tex21-201ENSMUST00000021453 2137 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Retrieved 100 of 76,532 protein–RNA pairs in 83.2 ms