Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Gm12896-201ENSMUST00000118430 226 ntBASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Iqck-206ENSMUST00000208658 2891 ntBASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Nr1h3Q9Z0Y9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm32699-201ENSMUST00000221728 1988 ntBASIC20.23■□□□□ 0.83
Nr1h3Q9Z0Y9 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm2559-201ENSMUST00000201323 363 ntBASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Nr1h3Q9Z0Y9 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.21■□□□□ 0.83
Nr1h3Q9Z0Y9 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Nr1h3Q9Z0Y9 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 C1qtnf5-202ENSMUST00000114816 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Gm27275-201ENSMUST00000184318 272 ntBASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Nr1h3Q9Z0Y9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Nr1h3Q9Z0Y9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h3Q9Z0Y9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
Nr1h3Q9Z0Y9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h3Q9Z0Y9 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Nr1h3Q9Z0Y9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC20.17■□□□□ 0.82
Nr1h3Q9Z0Y9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms