Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trim3Q9R1R2 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Gm18671-201ENSMUST00000214826 683 ntBASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.49■□□□□ 0.39
Trim3Q9R1R2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Trim3Q9R1R2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 CT030146.1-201ENSMUST00000220919 217 ntBASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Trim3Q9R1R2 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Gm5784-201ENSMUST00000179344 2478 ntBASIC17.47■□□□□ 0.39
Trim3Q9R1R2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Gm38342-201ENSMUST00000195710 2980 ntBASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Reep4-203ENSMUST00000226563 1444 ntBASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trim3Q9R1R2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Gm42569-201ENSMUST00000200539 472 ntBASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC17.46■□□□□ 0.39
Trim3Q9R1R2 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Trim3Q9R1R2 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Gm13234-201ENSMUST00000120010 747 ntBASIC17.45■□□□□ 0.38
Trim3Q9R1R2 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trim3Q9R1R2 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 AV356131-201ENSMUST00000206201 750 ntBASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
Trim3Q9R1R2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms