Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Nubp1Q9R060 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Gm19087-201ENSMUST00000191430 946 ntBASIC16.22■□□□□ 0.19
Nubp1Q9R060 Gm9987-201ENSMUST00000069768 567 ntBASIC16.22■□□□□ 0.19
Nubp1Q9R060 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Nubp1Q9R060 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Gm44549-201ENSMUST00000208351 577 ntBASIC16.21■□□□□ 0.19
Nubp1Q9R060 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Nubp1Q9R060 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.18
Nubp1Q9R060 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm11249-201ENSMUST00000117071 859 ntBASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm6433-201ENSMUST00000118634 875 ntBASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm7860-201ENSMUST00000121190 879 ntBASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 H2-K2-201ENSMUST00000174250 1049 ntBASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm10698-201ENSMUST00000182663 604 ntBASIC16.2■□□□□ 0.18
Nubp1Q9R060 Gm45609-206ENSMUST00000210176 1023 ntTSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Nubp1Q9R060 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Sec24b-201ENSMUST00000001079 5128 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Nubp1Q9R060 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Serbp1-207ENSMUST00000203436 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Gm9484-201ENSMUST00000195892 1159 ntBASIC16.18■□□□□ 0.18
Nubp1Q9R060 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Nubp1Q9R060 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Nubp1Q9R060 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
Nubp1Q9R060 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nubp1Q9R060 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nubp1Q9R060 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Nubp1Q9R060 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 76,532 protein–RNA pairs in 28.2 ms