Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
Smc1aQ9CU62 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
Smc1aQ9CU62 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Smc1aQ9CU62 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
Smc1aQ9CU62 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Gm10571-201ENSMUST00000097869 1638 ntBASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC20.76■□□□□ 0.91
Smc1aQ9CU62 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Smc1aQ9CU62 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Smc1aQ9CU62 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Smc1aQ9CU62 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Gm7514-201ENSMUST00000209475 934 ntBASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Smc1aQ9CU62 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Grk6-206ENSMUST00000224995 2971 ntBASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Smc1aQ9CU62 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Smc1aQ9CU62 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Dtymk-201ENSMUST00000027503 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Smc1aQ9CU62 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms