Protein–RNA interactions for Protein: Q99PP9

Trim16, Tripartite motif-containing protein 16, mousemouse

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim16Q99PP9 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Foxa2-201ENSMUST00000047315 2128 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Trim16Q99PP9 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC18.18■□□□□ 0.5
Trim16Q99PP9 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Trim16Q99PP9 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Trim16Q99PP9 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Sbf1-205ENSMUST00000144585 6165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Trim16Q99PP9 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gm14281-201ENSMUST00000121700 1294 ntBASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim16Q99PP9 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Trim16Q99PP9 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC18.15■□□□□ 0.5
Trim16Q99PP9 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC18.15■□□□□ 0.5
Trim16Q99PP9 CT030146.1-201ENSMUST00000220919 217 ntBASIC18.15■□□□□ 0.5
Trim16Q99PP9 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Trim16Q99PP9 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
Trim16Q99PP9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
Trim16Q99PP9 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim16Q99PP9 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim16Q99PP9 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Trim16Q99PP9 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Trim16Q99PP9 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Trim16Q99PP9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC18.13■□□□□ 0.49
Trim16Q99PP9 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Gm10129-202ENSMUST00000193100 1316 ntBASIC18.13■□□□□ 0.49
Trim16Q99PP9 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trim16Q99PP9 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Trim16Q99PP9 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim16Q99PP9 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim16Q99PP9 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trim16Q99PP9 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trim16Q99PP9 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms