Protein–RNA interactions for Protein: Q99LI9

Clp1, Polyribonucleotide 5'-hydroxyl-kinase Clp1, mousemouse

Predictions only

Length 425 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clp1Q99LI9 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clp1Q99LI9 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clp1Q99LI9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Clp1Q99LI9 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Clp1Q99LI9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Clp1Q99LI9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.82■□□□□ 0.76
Clp1Q99LI9 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Clp1Q99LI9 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Klf13-204ENSMUST00000185175 487 ntTSL 2 BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Clp1Q99LI9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Gm45640-201ENSMUST00000210665 1896 ntBASIC19.8■□□□□ 0.76
Clp1Q99LI9 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Gm6433-201ENSMUST00000118634 875 ntBASIC19.8■□□□□ 0.76
Clp1Q99LI9 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.8■□□□□ 0.76
Clp1Q99LI9 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Clp1Q99LI9 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Clp1Q99LI9 4930461C15Rik-201ENSMUST00000133622 1302 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Gm10549-201ENSMUST00000097634 450 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Lrrc73-201ENSMUST00000095262 1384 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Clp1Q99LI9 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Clp1Q99LI9 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Mrps10-204ENSMUST00000120737 1017 ntAPPRIS ALT1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gm10231-201ENSMUST00000181584 441 ntBASIC19.77■□□□□ 0.76
Clp1Q99LI9 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gm10175-202ENSMUST00000208752 441 ntBASIC19.77■□□□□ 0.76
Clp1Q99LI9 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Gm5417-201ENSMUST00000079706 384 ntBASIC19.77■□□□□ 0.76
Clp1Q99LI9 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Clp1Q99LI9 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Clp1Q99LI9 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Gm43799-201ENSMUST00000201845 579 ntBASIC19.76■□□□□ 0.75
Clp1Q99LI9 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Clp1Q99LI9 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Clp1Q99LI9 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms