Protein–RNA interactions for Protein: Q8VDP2

UPF0428 protein CXorf56 homolog, mousemouse

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Q8VDP2 Zcchc6-207ENSMUST00000225576 2499 ntBASIC18.18■□□□□ 0.5
Q8VDP2 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Q8VDP2 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Q8VDP2 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Q8VDP2 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Q8VDP2 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC18.17■□□□□ 0.5
Q8VDP2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Hist2h3c1-201ENSMUST00000176059 1820 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Q8VDP2 Hist2h3c1-202ENSMUST00000177796 1825 ntBASIC18.17■□□□□ 0.5
Q8VDP2 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Q8VDP2 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Q8VDP2 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC18.16■□□□□ 0.5
Q8VDP2 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Q8VDP2 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Q8VDP2 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Q8VDP2 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.14■□□□□ 0.5
Q8VDP2 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Plpp5-207ENSMUST00000139836 1539 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
Q8VDP2 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
Q8VDP2 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Lrrtm1-202ENSMUST00000159616 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Q8VDP2 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.14■□□□□ 0.49
Q8VDP2 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 AC117769.4-201ENSMUST00000225679 685 ntBASIC18.13■□□□□ 0.49
Q8VDP2 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Q8VDP2 Fmnl3-202ENSMUST00000088233 4423 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Q8VDP2 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Q8VDP2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.12■□□□□ 0.49
Q8VDP2 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.12■□□□□ 0.49
Q8VDP2 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.12■□□□□ 0.49
Q8VDP2 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
Q8VDP2 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Anapc5-201ENSMUST00000086216 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC18.12■□□□□ 0.49
Q8VDP2 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Q8VDP2 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 24.8 ms