Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Gm42778-201ENSMUST00000199644 553 ntBASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Gm19094-201ENSMUST00000209791 1246 ntBASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trim9Q8C7M3 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Trim9Q8C7M3 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Gm10033-202ENSMUST00000211874 928 ntBASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim9Q8C7M3 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC20.64■□□□□ 0.9
Trim9Q8C7M3 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.64■□□□□ 0.9
Trim9Q8C7M3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Trim9Q8C7M3 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim9Q8C7M3 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Trim9Q8C7M3 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Gm5874-201ENSMUST00000096101 508 ntBASIC20.62■□□□□ 0.89
Trim9Q8C7M3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Gm15039-201ENSMUST00000118914 875 ntBASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Trim9Q8C7M3 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Ap3s1-204ENSMUST00000225520 957 ntBASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.6■□□□□ 0.89
Trim9Q8C7M3 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Gm42642-201ENSMUST00000200683 355 ntBASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Trim9Q8C7M3 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim9Q8C7M3 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.58■□□□□ 0.89
Trim9Q8C7M3 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim9Q8C7M3 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim9Q8C7M3 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
Trim9Q8C7M3 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms