Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Spcs1-207ENSMUST00000228767 1008 ntBASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
Trim47Q8C0E3 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Zfp692-201ENSMUST00000049353 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Trim47Q8C0E3 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Trim47Q8C0E3 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
Trim47Q8C0E3 Gm43672-201ENSMUST00000199072 1731 ntBASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Gm12441-201ENSMUST00000121806 588 ntBASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Gm5408-201ENSMUST00000197998 747 ntBASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Prr22-201ENSMUST00000168666 1350 ntAPPRIS P1 TSL 3 BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Trim47Q8C0E3 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim47Q8C0E3 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim47Q8C0E3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim47Q8C0E3 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Rncr4-201ENSMUST00000194541 2234 ntBASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim47Q8C0E3 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Spc25-202ENSMUST00000112320 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Gm26524-201ENSMUST00000192339 390 ntBASIC20.65■□□□□ 0.9
Trim47Q8C0E3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms