Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Gm38205-201ENSMUST00000192243 258 ntBASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav5d-4Q5R1F6 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav5d-4Q5R1F6 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Cd37-209ENSMUST00000211373 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Gm9988-201ENSMUST00000069786 435 ntBASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav5d-4Q5R1F6 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav5d-4Q5R1F6 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav5d-4Q5R1F6 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav5d-4Q5R1F6 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav5d-4Q5R1F6 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
Trav5d-4Q5R1F6 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav5d-4Q5R1F6 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav5d-4Q5R1F6 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav5d-4Q5R1F6 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav5d-4Q5R1F6 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC16■□□□□ 0.15
Trav5d-4Q5R1F6 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav5d-4Q5R1F6 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16■□□□□ 0.15
Trav5d-4Q5R1F6 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav5d-4Q5R1F6 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 31.9 ms